RNA–Protein interactions for RNA: ENST00000557623.5

SLIRP-211, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 865 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-211ENST00000557623 PIGZQ86VD9 579 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 DDX42Q86XP3 938 aaKnown RBP eCLIP13.17□□□□□ -0.3
SLIRP-211ENST00000557623 KIAA1958Q8N8K9 716 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 LRRC3BQ96PB8 259 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 SLC22A12Q96S37 553 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 NELL2Q99435 816 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 PRRX2Q99811 253 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 C8orf33Q9H7E9 229 aaPredicted RBP13.17□□□□□ -0.3
SLIRP-211ENST00000557623 HEBP1Q9NRV9 189 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 FANCLQ9NW38 375 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 GMIPQ9P107 970 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 CCL26Q9Y258 94 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 VPS9D1Q9Y2B5 631 aa13.17□□□□□ -0.3
SLIRP-211ENST00000557623 MRPS17Q9Y2R5 130 aaKnown RBP13.17□□□□□ -0.3
SLIRP-211ENST00000557623 KANSL1LA0AUZ9 987 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 SMTNL1A8MU46 457 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 ARNTLO00327 626 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 MED7O43513 233 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 MBL2P11226 248 aaPredicted RBP13.16□□□□□ -0.3
SLIRP-211ENST00000557623 AOC1P19801 751 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 CDK11BP21127 795 aaKnown RBP13.16□□□□□ -0.3
SLIRP-211ENST00000557623 PDE4CQ08493 712 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 USP4Q13107 963 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 MTF1Q14872 753 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 PDGFRLQ15198 375 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 KRT31Q15323 416 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 ZNF77Q15935 545 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 ARHGAP44Q17R89 818 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 ANO6Q4KMQ2 910 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 RAB41Q5JT25 222 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 CWF19L1Q69YN2 538 aaKnown RBP13.16□□□□□ -0.3
SLIRP-211ENST00000557623 ZNF852Q6ZMS4 543 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 TPRG1Q6ZUI0 275 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 GPRIN1Q7Z2K8 1008 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 TADA2BQ86TJ2 420 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 TTC30AQ86WT1 665 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 ARHGAP18Q8N392 663 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 SH3RF2Q8TEC5 729 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 BPIFA3Q9BQP9 254 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 DDX23Q9BUQ8 820 aaKnown RBP13.16□□□□□ -0.3
SLIRP-211ENST00000557623 OSBPL6Q9BZF3 934 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 NACA2Q9H009 215 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 RNF38Q9H0F5 515 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 VPS16Q9H269 839 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 LRRC4Q9HBW1 653 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 GKN1Q9NS71 199 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 TAB2Q9NYJ8 693 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.16□□□□□ -0.3
SLIRP-211ENST00000557623 SIT1Q9Y3P8 196 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 USP3Q9Y6I4 520 aa13.16□□□□□ -0.3
SLIRP-211ENST00000557623 NCAM2O15394 837 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 RALAP11233 206 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 BRD2P25440 801 aaKnown RBP13.15□□□□□ -0.3
SLIRP-211ENST00000557623 PLA2G4AP47712 749 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 IFNAR2P48551 515 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 KPNA1P52294 538 aaPredicted RBP13.15□□□□□ -0.3
SLIRP-211ENST00000557623 VCPP55072 806 aaKnown RBP13.15□□□□□ -0.3
SLIRP-211ENST00000557623 MEA1Q16626 185 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 PKDCCQ504Y2 493 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 FKBP15Q5T1M5 1219 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 GJB7Q6PEY0 223 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 ZNF276Q8N554 614 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 UBA3Q8TBC4 463 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 OSCP1Q8WVF1 389 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 KCTD13Q8WZ19 329 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 TFAP2BQ92481 460 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 SHC3Q92529 594 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 ZFYVE19Q96K21 471 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 CDK5RAP1Q96SZ6 601 aaKnown RBP13.15□□□□□ -0.3
SLIRP-211ENST00000557623 FAM83CQ9BQN1 747 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 SIX2Q9NPC8 291 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 CYLDQ9NQC7 956 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 LIMA1Q9UHB6 759 aaKnown RBP13.15□□□□□ -0.3
SLIRP-211ENST00000557623 DNAJC12Q9UKB3 198 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 CPQQ9Y646 472 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 PIAS3Q9Y6X2 628 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 ZNF318Q5VUA4 2279 aa13.15□□□□□ -0.3
SLIRP-211ENST00000557623 M0QYV0 167 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 LEFTY2O00292 366 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 SLC9A3R1O14745 358 aaPredicted RBP13.14□□□□□ -0.31
SLIRP-211ENST00000557623 CYP26A1O43174 497 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 COCHO43405 550 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 TLR5O60602 858 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 GNA15P30679 374 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 ATP5C1P36542 298 aaKnown RBP13.14□□□□□ -0.31
SLIRP-211ENST00000557623 USP8P40818 1118 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 TKTL1P51854 596 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 AMPD2Q01433 879 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 GOLGA8FQ08AF8 430 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 GOLGA8DPQ0D2H9 430 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 KCNMA1Q12791 1236 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 RUNX3Q13761 415 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 NCAPHQ15003 741 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 ITPRIPL2Q3MIP1 535 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 KLHDC10Q6PID8 442 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 RALGPS2Q86X27 583 aaPredicted RBP13.14□□□□□ -0.31
SLIRP-211ENST00000557623 SIX6OS1Q8N1H7 587 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 AOPEPQ8N6M6 819 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 TMEM105Q8N8V8 129 aa13.14□□□□□ -0.31
SLIRP-211ENST00000557623 TTC16Q8NEE8 873 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms