RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 SCN1AP35498 2009 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 ATXN2Q99700 1313 aaKnown RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 OBSL1O75147 1896 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 THADAQ6YHU6 1953 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 GON4LQ3T8J9 2241 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 C2orf78A6NCI8 922 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 H0YCG3 227 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 K7ENM7 598 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 K7EQS6 105 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 TAF4O00268 1085 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 PIGRP01833 764 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 CKMP06732 381 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 USP17L7P0C7H9 530 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 CSH1P0DML2 217 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 CSH2P0DML3 217 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 HNRNPLP14866 589 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 OPRD1P41143 372 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 PRPHP41219 470 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 P2RY2P41231 377 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 PTGER3P43115 390 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 IFNAR2P48551 515 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 TAF6P49848 677 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 NEK4P51957 841 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 RACK1P63244 317 aaKnown RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 SIM1P81133 766 aaPredicted RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 LMAN2Q12907 356 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 CRY1Q16526 586 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 DDR2Q16832 855 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 CCDC142Q17RM4 750 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 GAB4Q2WGN9 574 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 ZC2HC1CQ53FD0 456 aaPredicted RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 ARSHQ5FYA8 562 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 HYIQ5T013 277 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 LPCAT2Q7L5N7 544 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 PIP4P1Q86T03 277 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 TTC30AQ86WT1 665 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 CCDC83Q8IWF9 413 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 SFTPA1Q8IWL2 248 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 TMEFF1Q8IYR6 380 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 DCP1BQ8IZD4 617 aaKnown RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 THEM5Q8N1Q8 247 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 FRMD1Q8N878 549 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 SYT2Q8N9I0 419 aaPredicted RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 TPCN2Q8NHX9 752 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 OLIG1Q8TAK6 271 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 SH3RF2Q8TEC5 729 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 KCNN1Q92952 543 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 COL26A1Q96A83 441 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 FRMD6Q96NE9 622 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 PNMA5Q96PV4 448 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 FNBP1Q96RU3 617 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 NUSAP1Q9BXS6 441 aaKnown RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 CCSER1Q9C0I3 900 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 LINC00597Q9H2U6 94 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 SLC32A1Q9H598 525 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 TMEM206Q9H813 350 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 TMEM74BQ9NUR3 256 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 DPP3Q9NY33 737 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 KCND2Q9NZV8 630 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 LARSQ9P2J5 1176 aaKnown RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 MBD1Q9UIS9 605 aaPredicted RBP6.28□□□□□ -1.4
VPS33B-207ENST00000557470 KCNG1Q9UIX4 513 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 MMP17Q9ULZ9 603 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 DERAQ9Y315 318 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 C2CD2Q9Y426 696 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 PCDHB5Q9Y5E4 795 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 PCDHGB7Q9Y5F8 929 aa6.28□□□□□ -1.4
VPS33B-207ENST00000557470 ZNF638Q14966 1978 aaKnown RBP6.27□□□□□ -1.4
VPS33B-207ENST00000557470 HELZ2Q9BYK8 2649 aaKnown RBP6.27□□□□□ -1.41
VPS33B-207ENST00000557470 TRAV19A0A0A6YYK7 116 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 PCNX2A6NKB5 2137 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 KPNA7A9QM74 516 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 UPK3BL1B0FP48 263 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 TISP43B9A030 160 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 UPK3BL2E5RIL1 263 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 LAD1O00515 517 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 TNFRSF10BO14763 440 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 NOL4O94818 638 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 CAPNS1P04632 268 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 PDGFRBP09619 1106 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 PLA2G4BP0C869 781 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 ENGP17813 658 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 PTMSP20962 102 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 CYP2F1P24903 491 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 ACOT2P49753 483 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 FAM193AP78312 1265 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 ZXDBP98169 803 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 TSPY1Q01534 308 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 MESP2Q0VG99 397 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 SEMA3BQ13214 749 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 KCNB1Q14721 858 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 NAA30Q147X3 362 aaPredicted RBP6.27□□□□□ -1.41
VPS33B-207ENST00000557470 FOXD4L6Q3SYB3 417 aaPredicted RBP6.27□□□□□ -1.41
VPS33B-207ENST00000557470 TMEM119Q4V9L6 283 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 ALG1LQ6GMV1 187 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 FOXD4L3Q6VB84 417 aaPredicted RBP6.27□□□□□ -1.41
VPS33B-207ENST00000557470 DTHD1Q6ZMT9 781 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 GPBP1Q86WP2 473 aa6.27□□□□□ -1.41
VPS33B-207ENST00000557470 SYT12Q8IV01 421 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms