RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 FAM92AA1XBS5 289 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 BCLAF3A2AJT9 711 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 BEST1O76090 585 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 KIF20AO95235 890 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 KLF8O95600 359 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 ASS1P00966 412 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 ZDHHC11BP0C7U3 371 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 GRIA2P42262 883 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 PIK3CAP42336 1068 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 SYKP43405 635 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 NDST1P52848 882 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 MAP3K7CLP57077 242 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 KDSRQ06136 332 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 MESP2Q0VG99 397 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 HSF5Q4G112 596 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 EOGTQ5NDL2 527 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 PMS2CLQ68D20 193 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 RNF43Q68DV7 783 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 TCEAL6Q6IPX3 200 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 SPOPLQ6IQ16 392 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 TMEM92Q6UXU6 159 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 C12orf40Q86WS4 652 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 SFTPA1Q8IWL2 248 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 C12orf29Q8N999 325 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 IL17RCQ8NAC3 791 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 TXNDC5Q8NBS9 432 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 ZMIZ2Q8NF64 920 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 MDGA1Q8NFP4 955 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 TCEAL3Q969E4 200 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 IMPG2Q9BZV3 1241 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 FBXO44Q9H4M3 255 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 POLMQ9NP87 494 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 TLR8Q9NR97 1041 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 TRAF3IP3Q9Y228 551 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 HPSEQ9Y251 543 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 CNOT1A5YKK6 2376 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 PLXND1Q9Y4D7 1925 aa11.72□□□□□ -0.53
CCDC88C-213ENST00000557455 TPRP12270 2363 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 SGK1O00141 431 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 TM4SF5O14894 197 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 MAPK13O15264 365 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 TLR5O60602 858 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 HLA-DRAP01903 254 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 FAM200BP0CF97 657 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 IRF1P10914 325 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 NR2F2P24468 414 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 ADORA2BP29275 332 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 TNFRSF4P43489 277 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 ASPAP45381 313 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 VAMP7P51809 220 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 KRT85P78386 507 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 PREPLQ4J6C6 727 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 EMC10Q5UCC4 262 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 NUDT18Q6ZVK8 323 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 BBS7Q8IWZ6 715 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 NAT16Q8N8M0 369 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 DUSP9Q99956 384 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 EDEM2Q9BV94 578 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 CSNK1G1Q9HCP0 422 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 ZDHHC4Q9NPG8 344 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 SPHK2Q9NRA0 654 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 FAM49BQ9NUQ9 324 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 BCCIPQ9P287 314 aaKnown RBP eCLIP11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 HMGXB4Q9UGU5 601 aa11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 CIZ1Q9ULV3 898 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-213ENST00000557455 TNRC6BQ9UPQ9 1833 aaKnown RBP11.71□□□□□ -0.54
CCDC88C-213ENST00000557455 ACACBO00763 2458 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 TBC1D3BA6NDS4 549 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 HOXC11O43248 304 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 TULP3O75386 442 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 RHOBTB3O94955 611 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 KRT13P13646 458 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 HNRNPLP14866 589 aaKnown RBP eCLIP11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 BCKDHBP21953 392 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 KIR2DL1P43626 348 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 NDUFA8P51970 172 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 ANO4Q32M45 955 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 C1orf220Q5T0J3 134 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 CLEC20AQ6ZU45 233 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 INTS8Q75QN2 995 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 CYP2U1Q7Z449 544 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 ETFBKMTQ8IXQ9 262 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 PGBD3Q8N328 593 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 PHTF2Q8N3S3 785 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 CCDC150Q8NCX0 1101 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 OLIG1Q8TAK6 271 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 WHAMMQ8TF30 809 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 WBP2Q969T9 261 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 JAKMIP2Q96AA8 810 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 CYFIP2Q96F07 1278 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 SPACA7Q96KW9 195 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 TWNKQ96RR1 684 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 HNRNPABQ99729 332 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 LSM14BQ9BX40 385 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 NT5C1AQ9BXI3 368 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 DNAI2Q9GZS0 605 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 DEC1Q9P2X7 70 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 MAPK8IP1Q9UQF2 711 aa11.7□□□□□ -0.54
CCDC88C-213ENST00000557455 TCRBV21S2A2A0A5A6 115 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms