RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SPTLC3Q9NUV7 552 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 UXTQ9UBK9 157 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-227ENST00000557269 NAGPAQ9UK23 515 aa13.47□□□□□ -0.25
SHMT2-227ENST00000557269 ZNF638Q14966 1978 aaKnown RBP13.47□□□□□ -0.25
SHMT2-227ENST00000557269 NCANO14594 1321 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 SOWAHDA6NJG2 315 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 GJB6O95452 261 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 ABL1P00519 1130 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 FTLP02792 175 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-227ENST00000557269 FYNP06241 537 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 GZMAP12544 262 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 IL9P15248 144 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 SP100P23497 879 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-227ENST00000557269 CDC25CP30307 473 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 YWHAGP61981 247 aaKnown RBP eCLIP13.46□□□□□ -0.25
SHMT2-227ENST00000557269 SMAD2Q15796 467 aaKnown RBP13.46□□□□□ -0.25
SHMT2-227ENST00000557269 SLC18A3Q16572 532 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 SNX30Q5VWJ9 437 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 OR6B2Q6IFH4 312 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 PTCRAQ6ISU1 281 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-227ENST00000557269 RAD9BQ6WBX8 426 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 MON1AQ86VX9 555 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 NPAS3Q8IXF0 933 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 MCOLN2Q8IZK6 566 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 LEMD2Q8NC56 503 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 ST13P5Q8NFI4 369 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-227ENST00000557269 IPO4Q8TEX9 1081 aaKnown RBP13.46□□□□□ -0.25
SHMT2-227ENST00000557269 OVCA2Q8WZ82 227 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 FGF13Q92913 245 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 C18orf8Q96DM3 657 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 MCRS1Q96EZ8 462 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 CCDC42Q96M95 316 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 MYADMQ96S97 322 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 CYP2S1Q96SQ9 504 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 BAG1Q99933 345 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-227ENST00000557269 RNF38Q9H0F5 515 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 ISCUQ9H1K1 167 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 CCSER2Q9H7U1 834 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 EHD2Q9NZN4 543 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 TRPM5Q9NZQ8 1165 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 ADAM22Q9P0K1 906 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 NUDT5Q9UKK9 219 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 PRUNE2Q8WUY3 3088 aa13.46□□□□□ -0.25
SHMT2-227ENST00000557269 OBSL1O75147 1896 aa13.46□□□□□ -0.26
SHMT2-227ENST00000557269 DENND4AQ7Z401 1863 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 MYO16Q9Y6X6 1858 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 TCRBV5S1A1TA0A578 114 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 GOLGA8SH3BPF8 625 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 ZNF197O14709 1029 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 AKR1B10O60218 316 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 RTN2O75298 545 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 GRAP2O75791 330 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 FBXO21O94952 628 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 FGF19O95750 216 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 TBX18O95935 607 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 RRM1P23921 792 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 GSDMDP57764 484 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 SLC6A3Q01959 620 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 C1QBPQ07021 282 aaKnown RBP13.45□□□□□ -0.26
SHMT2-227ENST00000557269 CCDC122Q5T0U0 273 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 GPR158Q5T848 1215 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 BSPRYQ5W0U4 402 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 ALKBH5Q6P6C2 394 aaKnown RBP13.45□□□□□ -0.26
SHMT2-227ENST00000557269 VPS36Q86VN1 386 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 MAB21L3Q8N8X9 362 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 PDZD8Q8NEN9 1154 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 IRGQQ8WZA9 623 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 EDEM1Q92611 657 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 NECTIN4Q96NY8 510 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 PACSIN1Q9BY11 444 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 SMG9Q9H0W8 520 aaKnown RBP13.45□□□□□ -0.26
SHMT2-227ENST00000557269 DEF6Q9H4E7 631 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 TRPC7Q9HCX4 862 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 TLR8Q9NR97 1041 aaKnown RBP13.45□□□□□ -0.26
SHMT2-227ENST00000557269 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.45□□□□□ -0.26
SHMT2-227ENST00000557269 THEGQ9P2T0 379 aa13.45□□□□□ -0.26
SHMT2-227ENST00000557269 SPTBN5Q9NRC6 3674 aaKnown RBP13.45□□□□□ -0.26
SHMT2-227ENST00000557269 MDM4O15151 490 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 ATMINO43313 823 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-227ENST00000557269 COCHO43405 550 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 OAS1P00973 400 aaKnown RBP13.44□□□□□ -0.26
SHMT2-227ENST00000557269 LTFP02788 710 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 RARGP13631 454 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 PPP3CCP48454 512 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 ZNF268Q14587 947 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-227ENST00000557269 SYPL2Q5VXT5 272 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 TRNP1Q6NT89 227 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 TMTC1Q8IUR5 882 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 LRRC8AQ8IWT6 810 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 ARL14EPQ8N8R7 260 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-227ENST00000557269 MRPS31Q92665 395 aaKnown RBP13.44□□□□□ -0.26
SHMT2-227ENST00000557269 GCNAQ96QF7 691 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 TASP1Q9H6P5 420 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 CDH7Q9ULB5 785 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 NAALADL1Q9UQQ1 740 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 COL6A3P12111 3177 aa13.44□□□□□ -0.26
SHMT2-227ENST00000557269 DENND4CQ5VZ89 1909 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 ANAPC1Q9H1A4 1944 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 GOLGA6L6A8MZA4 724 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 TLR5O60602 858 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms