RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PGM2L1Q6PCE3 622 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 TDRPQ86YL5 185 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 C4orf33Q8N1A6 199 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 CDKL2Q92772 493 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 PMEPA1Q969W9 287 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 SHISA4Q96DD7 197 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 COG8Q96MW5 612 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 CDK5RAP1Q96SZ6 601 aaKnown RBP14.32□□□□□ -0.12
SHMT2-226ENST00000556825 C1orf50Q9BV19 199 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 POLMQ9NP87 494 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-226ENST00000556825 THG1LQ9NWX6 298 aaKnown RBP14.32□□□□□ -0.12
SHMT2-226ENST00000556825 MYRFQ9Y2G1 1151 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 TRAF6Q9Y4K3 522 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 SYNGAP1Q96PV0 1343 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 ESYT2A0FGR8 921 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 FCER1AP12319 257 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 ABCB4P21439 1286 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 NKX2-5P52952 324 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 GNA12Q03113 381 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 PPATQ06203 517 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 GALNT2Q10471 571 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 PRUNE1Q86TP1 453 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 AKAP14Q86UN6 197 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 ALYREFQ86V81 257 aaKnown RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 TMEM151BQ8IW70 566 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 HERVK_113Q902F9 699 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 TRIB2Q92519 343 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 GCOM2Q9BZD3 368 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 EHMT1Q9H9B1 1298 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 SCPEP1Q9HB40 452 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 SSU72Q9NP77 194 aaKnown RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 AVENQ9NQS1 362 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 TMCC3Q9ULS5 477 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 POLIQ9UNA4 740 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 CDC14AQ9UNH5 594 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 RNF11Q9Y3C5 154 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 ZNF839A8K0R7 811 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 A8MX80 341 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 DYNC1LI2O43237 492 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 WEE1P30291 646 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 NUDT1P36639 197 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 HADHAP40939 763 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 CBX5P45973 191 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 APLP1P51693 650 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 FCHO2Q0JRZ9 810 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 GNA13Q14344 377 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 CHRNA2Q15822 529 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 PKN2Q16513 984 aaKnown RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 FGD3Q5JSP0 725 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 CNNM4Q6P4Q7 775 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 OTOP3Q7RTS5 596 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 CHERPQ8IWX8 916 aaKnown RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 TNFRSF25Q93038 417 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 MAP6Q96JE9 813 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 FRMD8Q9BZ67 464 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-226ENST00000556825 VPS11Q9H270 941 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 SMYD3Q9H7B4 428 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 SP140LQ9H930 580 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 SNTG2Q9NY99 539 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 PTPN22Q9Y2R2 807 aa14.31□□□□□ -0.12
SHMT2-226ENST00000556825 SF3B1O75533 1304 aaKnown RBP eCLIP14.3□□□□□ -0.125e-8■■■■■ 37.4
SHMT2-226ENST00000556825 GOLGA8JA6NMD2 632 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 ZW10O43264 779 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 ZC3H11AO75152 810 aaKnown RBP eCLIP14.3□□□□□ -0.12
SHMT2-226ENST00000556825 CALM1P0DP23 149 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 CALM2P0DP24 149 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 CALM3P0DP25 149 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 TATP17735 454 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-226ENST00000556825 KRT15P19012 456 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 PLCG1P19174 1290 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 TGM1P22735 817 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 CAV1Q03135 178 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 AARS2Q5JTZ9 985 aaKnown RBP14.3□□□□□ -0.12
SHMT2-226ENST00000556825 NOP9Q86U38 636 aaKnown RBP14.3□□□□□ -0.12
SHMT2-226ENST00000556825 ASCC1Q8N9N2 400 aaKnown RBP14.3□□□□□ -0.12
SHMT2-226ENST00000556825 NLRP7Q8WX94 980 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 NACC1Q96RE7 527 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 FERD3LQ96RJ6 166 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 WRNIP1Q96S55 665 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 OR2B2Q9GZK3 357 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 ANLNQ9NQW6 1124 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 CHD4Q14839 1912 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 PSME4Q14997 1843 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 C1orf232A0A0U1RR37 186 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 C2orf71A6NGG8 1288 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 H3BUI4 141 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 CAPN1P07384 714 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 ABHD2P08910 425 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 DCKP27707 260 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 GCAP28676 217 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 MAP3K7CLP57077 242 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 TXNL4AP83876 142 aaKnown RBP14.3□□□□□ -0.12
SHMT2-226ENST00000556825 TFDP1Q14186 410 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 C6orf10Q5SRN2 563 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 GALNT18Q6P9A2 607 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 ANKRD13DQ6ZTN6 518 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 KCTD20Q7Z5Y7 419 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 ZDHHC14Q8IZN3 488 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 ALG3Q92685 438 aa14.3□□□□□ -0.12
SHMT2-226ENST00000556825 TXNDC15Q96J42 360 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms