RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 SLFN12LQ6IEE8 588 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 MAMDC4Q6UXC1 1216 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 ZPBP2Q6X784 338 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 USP50Q70EL3 339 aaPredicted RBP5.31□□□□□ -1.56
TMEM260-210ENST00000556422 MON1BQ7L1V2 547 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 PRELID2Q8N945 189 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 NCLNQ969V3 563 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 NRBF2Q96F24 287 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 RBM18Q96H35 190 aaKnown RBP5.31□□□□□ -1.56
TMEM260-210ENST00000556422 TCF12Q99081 682 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 HNRNPABQ99729 332 aaKnown RBP5.31□□□□□ -1.56
TMEM260-210ENST00000556422 TRIM51Q9BSJ1 452 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 NUF2Q9BZD4 464 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 VCX3AQ9NNX9 186 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 PHF24Q9UPV7 400 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 PCDHB2Q9Y5E7 798 aa5.31□□□□□ -1.56
TMEM260-210ENST00000556422 PDCD11Q14690 1871 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 MIF4GDA9UHW6 222 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 DAPK3O43293 454 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 TOM1L1O75674 476 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 TRPA1O75762 1119 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 FBXO21O94952 628 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 KRT5P13647 590 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 KRT4P19013 534 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 GNL1P36915 607 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 NOP14P78316 857 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CUL2Q13617 745 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 ANKDD1AQ495B1 522 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 DAB2IPQ5VWQ8 1189 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 FAM160B1Q5W0V3 765 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 IL31Q6EBC2 164 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 TTC27Q6P3X3 843 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 FOXR1Q6PIV2 292 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 SLC2A7Q6PXP3 512 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 C16orf54Q6UWD8 224 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 PLPPR4Q7Z2D5 763 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 MCOLN2Q8IZK6 566 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 TAB3Q8N5C8 712 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 RAPGEF5Q92565 580 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 GLG1Q92896 1179 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 C18orf8Q96DM3 657 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 ACO2Q99798 780 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 HERPUD2Q9BSE4 406 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CEP44Q9C0F1 390 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 MINDY3Q9H8M7 445 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 XAB2Q9HCS7 855 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CYLDQ9NQC7 956 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 NRBP2Q9NSY0 501 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 UVRAGQ9P2Y5 699 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 GTF2A1LQ9UNN4 478 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 RALGAPA2Q2PPJ7 1873 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 TRIP12Q14669 1992 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 SCN1AP35498 2009 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 H0YGN5 161 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 O00370 1275 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 B4GALT5O43286 388 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 ITGBL1O95965 494 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 PDHA1P08559 390 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 HOXC6P09630 235 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 MYBL1P10243 752 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 BTF3P20290 206 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CTNNA2P26232 953 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 PBLDP30039 288 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 PLTPP55058 493 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CTAG1AP78358 180 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 GBE1Q04446 702 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 RUNX1T1Q06455 604 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 LRRC74AQ0VAA2 488 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 PTP4A2Q12974 167 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 MSLNQ13421 630 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CUL1Q13616 776 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 PHLDB2Q86SQ0 1253 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CCDC116Q8IYX3 515 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 TMEM130Q8N3G9 435 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 RNF149Q8NC42 400 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 PPFIBP2Q8ND30 876 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CPA5Q8WXQ8 436 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 DACT3Q96B18 629 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CYFIP2Q96F07 1278 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 ZNF668Q96K58 619 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CNDP2Q96KP4 475 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 MMP19Q99542 508 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 KATNBL1Q9H079 304 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 RNPEPQ9H4A4 650 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 ATP13A3Q9H7F0 1226 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 LRRC4CQ9HCJ2 640 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 FARSBQ9NSD9 589 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 KLC4Q9NSK0 619 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 ZDHHC18Q9NUE0 388 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CNOT8Q9UFF9 292 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CPSF3Q9UKF6 684 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 NFS1Q9Y697 457 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 KRBA1A5PL33 1030 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 TP73O15350 636 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 CLDN3O15551 220 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 SHOX2O60902 331 aaPredicted RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 MAP3K6O95382 1288 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 ASS1P00966 412 aaKnown RBP5.3□□□□□ -1.56
TMEM260-210ENST00000556422 APOA4P06727 396 aa5.3□□□□□ -1.56
TMEM260-210ENST00000556422 MYZAPP0CAP1 466 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms