RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	OLFML1	Q6UWY5	402 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	RSRC2	Q7L4I2	434 aa	Known RBP	13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	GPR149	Q86SP6	731 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	C3orf20	Q8ND61	904 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	RNF139	Q8WU17	664 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	HLA-C	Q95604	372 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	ZNF707	Q96C28	371 aa	Predicted RBP	13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	ATXN3L	Q9H3M9	355 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	ASNSD1	Q9NWL6	643 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	HCFC1R1	Q9NWW0	138 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	GMIP	Q9P107	970 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	CLEC1B	Q9P126	229 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	DNMT3B	Q9UBC3	853 aa	Known RBP	13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	MYO1A	Q9UBC5	1043 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	TJP2	Q9UDY2	1190 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	CNOT8	Q9UFF9	292 aa	Known RBP	13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	CD207	Q9UJ71	328 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	INTU	Q9ULD6	942 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	PCDHA13	Q9Y5I0	950 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	PTPRD	P23468	1912 aa		13.13	□□□□□ -0.31
ABCD4-223	ENST00000555904	PATJ	Q8NI35	1801 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	YJEFN3	A6XGL0	299 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904		E7ENQ6	273 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	PAPLN	O95428	1278 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	LTF	P02788	710 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	TMEM253	P0C7T8	217 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	KRT3	P12035	628 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	KCNA5	P22460	613 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	RRM1	P23921	792 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	MTHFR	P42898	656 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	EPHA5	P54756	1037 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	GALC	P54803	685 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	GSC	P56915	257 aa	Predicted RBP	13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	YWHAZ	P63104	245 aa	Known RBP	13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	PTP4A2	Q12974	167 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	SYCE2	Q6PIF2	218 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	SLC26A9	Q7LBE3	791 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	TMC8	Q8IU68	726 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	HS6ST3	Q8IZP7	471 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	CLEC4C	Q8WTT0	213 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	NECTIN4	Q96NY8	510 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	DESI2	Q9BSY9	194 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	THAP2	Q9H0W7	228 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	SLITRK6	Q9H5Y7	841 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	UBE2Z	Q9H832	354 aa	Predicted RBP	13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	POPDC2	Q9HBU9	364 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	ZNF334	Q9HCZ1	680 aa	Predicted RBP	13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	METTL5	Q9NRN9	209 aa	Known RBP	13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	ABCC13	Q9NSE7	274 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	CLIC5	Q9NZA1	410 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	CHORDC1	Q9UHD1	332 aa	Predicted RBP	13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	ZMYM5	Q9UJ78	669 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	MRPS23	Q9Y3D9	190 aa	Known RBP	13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904	CLUH	O75153	1309 aa		13.12	□□□□□ -0.31
ABCD4-223	ENST00000555904		A0A1W2PQH9	124 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904		A0A1W2PRU2	124 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	ZNF840P	A6NDX5	716 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	ATMIN	O43313	823 aa	Predicted RBP	13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	NCAM1	P13591	858 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	FSHR	P23945	695 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	DDX6	P26196	483 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	TUB	P50607	506 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	RNASE9	P60153	205 aa	Known RBP	13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	DLX2	Q07687	328 aa	Predicted RBP	13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	KIF5A	Q12840	1032 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	CLUL1	Q15846	466 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	BSPRY	Q5W0U4	402 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	PHLDB2	Q86SQ0	1253 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	RHOT2	Q8IXI1	618 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	SMRP1	Q8NCR6	262 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	ACRBP	Q8NEB7	543 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	MAFA	Q8NHW3	353 aa	Predicted RBP	13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	MCRS1	Q96EZ8	462 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	MSLNL	Q96KJ4	702 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	MCEE	Q96PE7	176 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	TSGA10	Q9BZW7	698 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	TRPC7	Q9HCX4	862 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	AVEN	Q9NQS1	362 aa	Predicted RBP	13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	OLA1	Q9NTK5	396 aa	Known RBP	13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	CTTNBP2NL	Q9P2B4	639 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	STAP1	Q9ULZ2	295 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	NENF	Q9UMX5	172 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	COG5	Q9UP83	839 aa		13.11	□□□□□ -0.31
ABCD4-223	ENST00000555904	TRAV19	A0A0A6YYK7	116 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	SIGLEC16	A6NMB1	481 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904		H3BQ06	376 aa	Predicted RBP	13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	ZNF263	O14978	683 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	DAB1	O75553	588 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	GRAP2	O75791	330 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	GABBR2	O75899	941 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	F11	P03951	625 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	RARG	P13631	454 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	LTBR	P36941	435 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	VAV2	P52735	878 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	NTHL1	P78549	312 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	MAMLD1	Q13495	774 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	DCAF6	Q58WW2	860 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	C10orf120	Q5SQS8	335 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	HECTD3	Q5T447	861 aa		13.1	□□□□□ -0.31
ABCD4-223	ENST00000555904	SNX30	Q5VWJ9	437 aa		13.1	□□□□□ -0.31

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