RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SLC10A6Q3KNW5 377 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ZC3H18Q86VM9 953 aaKnown RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 LONP2Q86WA8 852 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 FBXO16Q8IX29 292 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 PLD5Q8N7P1 536 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 FAM13CQ8NE31 585 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 MCUQ8NE86 351 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 UBA3Q8TBC4 463 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ZNF670Q9BS34 389 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ADAM33Q9BZ11 813 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 RAB6BQ9NRW1 208 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 TSPAN16Q9UKR8 245 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 WDR91A4D1P6 747 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 E5RJQ4 531 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 MDM4O15151 490 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 PGK2P07205 417 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 CALB2P22676 271 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 PRKCHP24723 683 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ARFIP2P53365 341 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 YWHAZP63104 245 aaKnown RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 CCDC14Q49A88 953 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 PLEKHG4Q58EX7 1191 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 FAM91A1Q658Y4 838 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 MAP1SQ66K74 1059 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 TRNP1Q6NT89 227 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ZNF449Q6P9G9 518 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 MTDHQ86UE4 582 aaKnown RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ZDHHC17Q8IUH5 632 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 CDKL3Q8IVW4 592 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 TAB3Q8N5C8 712 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ENDOVQ8N8Q3 282 aaKnown RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 SERAC1Q96JX3 654 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ZNF668Q96K58 619 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 CNTN3Q9P232 1028 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 KANSL3Q9P2N6 904 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 TTLL3Q9Y4R7 772 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 GOLGA8RI6L899 631 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 KCNN4O15554 427 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 PEX11AO75192 247 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 HAUS5O94927 633 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 CBX6O95503 412 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 ZBED1O96006 694 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 C1QAP02745 245 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 RPSAP08865 295 aaKnown RBP14.03□□□□□ -0.16
SHMT2-222ENST00000555774 SNRPAP09012 282 aaKnown RBP14.03□□□□□ -0.16
SHMT2-222ENST00000555774 CYP3A5P20815 502 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 OSBPP22059 807 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 BCAR1P56945 870 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 CDK16Q00536 496 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 KRT72Q14CN4 511 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 RFWD2Q8NHY2 731 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 MTBPQ96DY7 904 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 KLF6Q99612 283 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-222ENST00000555774 MROH8Q9H579 483 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 PCDH18Q9HCL0 1135 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 DPP3Q9NY33 737 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 SLC5A4Q9NY91 659 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 ASB14A6NK59 587 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 COPEO14579 308 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 CCDC22O60826 627 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 PFKMP08237 780 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 IL4RP24394 825 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 SDC4P31431 198 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 CCNFP41002 786 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 IREB2P48200 963 aaKnown RBP14.03□□□□□ -0.16
SHMT2-222ENST00000555774 C15orf59Q2T9L4 293 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-222ENST00000555774 GOLGA7BQ2TAP0 167 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 C1orf228Q6PIY5 440 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 OLFML1Q6UWY5 402 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 SESTD1Q86VW0 696 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 LRRC6Q86X45 466 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 PQLC3Q8N755 202 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 STK32AQ8WU08 396 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 CNKSR2Q8WXI2 1034 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 PTPRN2Q92932 1015 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 SKA1Q96BD8 255 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 SLC4A5Q9BY07 1137 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 IQCGQ9H095 443 aaKnown RBP14.03□□□□□ -0.16
SHMT2-222ENST00000555774 POPDC2Q9HBU9 364 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 ETNK2Q9NVF9 386 aa14.03□□□□□ -0.16
SHMT2-222ENST00000555774 A0A087WZ62 844 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 LUC7L3O95232 432 aaKnown RBP14.02□□□□□ -0.16
SHMT2-222ENST00000555774 PYGBP11216 843 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 INSRRP14616 1297 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 ZFXP17010 805 aaPredicted RBP14.02□□□□□ -0.16
SHMT2-222ENST00000555774 ARF4P18085 180 aaPredicted RBP14.02□□□□□ -0.16
SHMT2-222ENST00000555774 GNAZP19086 355 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 KCNA4P22459 653 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 SERPINB4P48594 390 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 SLC6A3Q01959 620 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 CDK18Q07002 472 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 LAMC2Q13753 1193 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 PKDCCQ504Y2 493 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 CMPK2Q5EBM0 449 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 ANKRD20A2Q5SQ80 823 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 SH3PXD2AQ5TCZ1 1133 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 ANKRD20A1Q5TYW2 823 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 ANKRD20A3Q5VUR7 823 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 ERO1BQ86YB8 467 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 RAB3IL1Q8TBN0 382 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms