RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 ATXN8OSP0DMR3 200 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 CD44P16070 742 aaKnown RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 BMP6P22004 513 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 ADORA2BP29275 332 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 ATP5C1P36542 298 aaKnown RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 OPRD1P41143 372 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 FMO5P49326 533 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 KIF11P52732 1056 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 MARSP56192 900 aaKnown RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 GOLGA8FQ08AF8 430 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 GOLGA8DPQ0D2H9 430 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 CETN1Q12798 172 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 CUL2Q13617 745 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 DHCR24Q15392 516 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 GAB4Q2WGN9 574 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 HSF5Q4G112 596 aaPredicted RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 PPP1R26Q5T8A7 1209 aaPredicted RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 LAIR1Q6GTX8 287 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 HTR3DQ70Z44 454 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 SYT13Q7L8C5 426 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 ARHGAP18Q8N392 663 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 ANKRD52Q8NB46 1076 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 SLC4A11Q8NBS3 891 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 ERCC4Q92889 916 aaPredicted RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 ACDQ96AP0 544 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 HEXIM2Q96MH2 286 aaKnown RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 CCSER2Q9H7U1 834 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 FBRSL1Q9HCM7 1045 aaKnown RBP12.49□□□□□ -0.41
VRK1-204ENST00000555351 SMPD4Q9NXE4 827 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 CHMP5Q9NZZ3 219 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 NCDNQ9UBB6 729 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 RAB23Q9ULC3 237 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 DMDP11532 3685 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 GVINP1Q7Z2Y8 2422 aa12.49□□□□□ -0.41
VRK1-204ENST00000555351 HOXC11O43248 304 aaPredicted RBP12.48□□□□□ -0.41
VRK1-204ENST00000555351 GADD45BO75293 160 aaPredicted RBP12.48□□□□□ -0.41
VRK1-204ENST00000555351 FGFR1OPO95684 399 aaKnown RBP12.48□□□□□ -0.41
VRK1-204ENST00000555351 ACO1P21399 889 aaKnown RBP12.48□□□□□ -0.41
VRK1-204ENST00000555351 RAB41Q5JT25 222 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 RHBDF2Q6PJF5 856 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 TTC16Q8NEE8 873 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 KCNV2Q8TDN2 545 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 TATDN2Q93075 761 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 NACA2Q9H009 215 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.48□□□□□ -0.417e-6■■■■■ 74.5
VRK1-204ENST00000555351 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.48□□□□□ -0.41
VRK1-204ENST00000555351 SLC8A2Q9UPR5 921 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 SH3BP1Q9Y3L3 701 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 MYH10P35580 1976 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 OTOGLQ3ZCN5 2332 aa12.48□□□□□ -0.41
VRK1-204ENST00000555351 MYO16Q9Y6X6 1858 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 FOXD2O60548 495 aaPredicted RBP12.47□□□□□ -0.41
VRK1-204ENST00000555351 RETP07949 1114 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 PAEPP09466 180 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 ADH5P11766 374 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 SDHBP21912 280 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 PLA2G4AP47712 749 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 FNTBP49356 437 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 MRPS21P82921 87 aaKnown RBP12.47□□□□□ -0.41
VRK1-204ENST00000555351 GAD2Q05329 585 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 PAK1Q13153 545 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 STILQ15468 1287 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 CCDC40Q4G0X9 1142 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 ZNF394Q53GI3 561 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 GPRIN1Q7Z2K8 1008 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 TRIM59Q8IWR1 403 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 UBR7Q8N806 425 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 NELFBQ8WX92 580 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 EZH1Q92800 747 aaPredicted RBP12.47□□□□□ -0.41
VRK1-204ENST00000555351 JAKMIP2Q96AA8 810 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 LOXL4Q96JB6 756 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 PNKPQ96T60 521 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 ARID3AQ99856 593 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 KLF16Q9BXK1 252 aaPredicted RBP12.47□□□□□ -0.41
VRK1-204ENST00000555351 KIAA1468Q9P260 1216 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 EBF1Q9UH73 591 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 DNMT3LQ9UJW3 386 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 GMEB2Q9UKD1 530 aa12.47□□□□□ -0.41
VRK1-204ENST00000555351 K7EQS6 105 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 XPO1O14980 1071 aaKnown RBP12.46□□□□□ -0.41
VRK1-204ENST00000555351 CYP26A1O43174 497 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 HRO43593 1189 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 GREM1O60565 184 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 RALAP11233 206 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 VDRP11473 427 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 RARGP13631 454 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 GRIA2P42262 883 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 TNFRSF4P43489 277 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 BCAT1P54687 386 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 COG7P83436 770 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 FOXK2Q01167 660 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 GCNT1Q02742 428 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 SIM2Q14190 667 aaPredicted RBP12.46□□□□□ -0.41
VRK1-204ENST00000555351 SGO2Q562F6 1265 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 BTBD8Q5XKL5 378 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 PM20D1Q6GTS8 502 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 ISM2Q6H9L7 571 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 PKN3Q6P5Z2 889 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 NUDT18Q6ZVK8 323 aa12.46□□□□□ -0.41
VRK1-204ENST00000555351 ETFBKMTQ8IXQ9 262 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms