RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 DNAI1Q9UI46 699 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 CCL26Q9Y258 94 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 NME7Q9Y5B8 376 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHMT2-214ENST00000554604 PROB1E7EW31 1015 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 CLDN5O00501 218 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 SLU7O95391 586 aaKnown RBP13.15□□□□□ -0.3
SHMT2-214ENST00000554604 ASS1P00966 412 aaKnown RBP13.15□□□□□ -0.3
SHMT2-214ENST00000554604 USP17L7P0C7H9 530 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 EPB41P11171 864 aaKnown RBP13.15□□□□□ -0.3
SHMT2-214ENST00000554604 CASQ1P31415 396 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 SOX9P48436 509 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 PDE6CP51160 858 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 GNG11P61952 73 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 KCNMA1Q12791 1236 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 ITPRIPL2Q3MIP1 535 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 C1orf220Q5T0J3 134 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 ZC3H14Q6PJT7 736 aaKnown RBP13.15□□□□□ -0.3
SHMT2-214ENST00000554604 RALGPS2Q86X27 583 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-214ENST00000554604 NEK11Q8NG66 645 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 C8orf48Q96LL4 319 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 CYP2S1Q96SQ9 504 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 B3GNT5Q9BYG0 378 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 ZNF518BQ9C0D4 1074 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 NUCKS1Q9H1E3 243 aaKnown RBP13.15□□□□□ -0.3
SHMT2-214ENST00000554604 GKN1Q9NS71 199 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 TRPM5Q9NZQ8 1165 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 MYO1AQ9UBC5 1043 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 SPTBN4Q9H254 2564 aa13.15□□□□□ -0.3
SHMT2-214ENST00000554604 GVINP1Q7Z2Y8 2422 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 SHISA7A6NL88 538 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 EIF3CLB5ME19 914 aaKnown RBP13.14□□□□□ -0.31
SHMT2-214ENST00000554604 SPECC1L-ADORA2AF8WAN1 911 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 KIF5CO60282 957 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 TADA3O75528 432 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 ABL1P00519 1130 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 SP9P0CG40 484 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 HDCP19113 662 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 CTHP32929 405 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 NOP14P78316 857 aaKnown RBP13.14□□□□□ -0.31
SHMT2-214ENST00000554604 KRT83P78385 493 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 ENPEPQ07075 957 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 TNK2Q07912 1038 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 PPP3CAQ08209 521 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 IFRD2Q12894 506 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-214ENST00000554604 ZNF268Q14587 947 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-214ENST00000554604 SPOPLQ6IQ16 392 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 ACOT1Q86TX2 421 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 ACRBPQ8NEB7 543 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 SYN2Q92777 582 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-214ENST00000554604 SLITRK1Q96PX8 696 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 EIF3CQ99613 913 aaKnown RBP13.14□□□□□ -0.31
SHMT2-214ENST00000554604 DNAI2Q9GZS0 605 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 SDCBP2Q9H190 292 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 LMAN1LQ9HAT1 526 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 ARMCX3Q9UH62 379 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-214ENST00000554604 MYO16Q9Y6X6 1858 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 MYOFQ9NZM1 2061 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 CFAP54Q96N23 3096 aa13.14□□□□□ -0.31
SHMT2-214ENST00000554604 C2orf78A6NCI8 922 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 RTN3O95197 1032 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-214ENST00000554604 GTF2H1P32780 548 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 ARHGAP25P42331 645 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 PPP3CCP48454 512 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 NDST1P52848 882 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 CACNA2D1P54289 1103 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 USP46P62068 366 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 CSTF1Q05048 431 aaKnown RBP13.13□□□□□ -0.31
SHMT2-214ENST00000554604 KCNH2Q12809 1159 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 MTAPQ13126 283 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 FZD5Q13467 585 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 LRRC32Q14392 662 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 TCERG1LQ5VWI1 586 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 KRT39Q6A163 491 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 FAM35AQ86V20 835 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 UNC93AQ86WB7 457 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 NUP93Q8N1F7 819 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 ARL14EPQ8N8R7 260 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-214ENST00000554604 TAS1R2Q8TE23 839 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 BAP1Q92560 729 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 SMARCD1Q96GM5 515 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 SLC22A12Q96S37 553 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 TTLL2Q9BWV7 592 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 EBF3Q9H4W6 596 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 TMEM8AQ9HCN3 771 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 DMAP1Q9NPF5 467 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-214ENST00000554604 FBXO4Q9UKT5 387 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 REXO2Q9Y3B8 237 aaKnown RBP13.13□□□□□ -0.31
SHMT2-214ENST00000554604 R4GN57 208 aa13.13□□□□□ -0.31
SHMT2-214ENST00000554604 DMDP11532 3685 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 ZNF292O60281 2723 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 GTPBP10A4D1E9 387 aaKnown RBP13.12□□□□□ -0.31
SHMT2-214ENST00000554604 PRR23AA6NEV1 266 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 EPHB6O15197 1021 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 FANCGO15287 622 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 AP1G2O75843 785 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 AFPP02771 609 aaKnown RBP13.12□□□□□ -0.31
SHMT2-214ENST00000554604 PFKLP17858 780 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 YWHAQP27348 245 aa13.12□□□□□ -0.31
SHMT2-214ENST00000554604 ASPAP45381 313 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms