RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PTPRDP23468 1912 aa10.84□□□□□ -0.67
CCDC88C-206ENST00000553437 NUP210Q8TEM1 1887 aaPredicted RBP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 A0A1W2PQH9 124 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 PRR23AA6NEV1 266 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 TULP2O00295 520 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 O00370 1275 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 SCAMP3O14828 347 aaKnown RBP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 GREM1O60565 184 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 TLR5O60602 858 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 CCDC192P0DO97 292 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 VDRP11473 427 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 YWHAEP62258 255 aaKnown RBP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 SATB1Q01826 763 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 GCNT1Q02742 428 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 CETN1Q12798 172 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 DPCR1Q3MIW9 517 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 PKDCCQ504Y2 493 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 SGO2Q562F6 1265 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 TSSK4Q6SA08 328 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 RRAGAQ7L523 313 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 CCDC186Q7Z3E2 898 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 PIGZQ86VD9 579 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 DDX42Q86XP3 938 aaKnown RBP eCLIP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 ARHGEF19Q8IW93 802 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 SYNPOQ8N3V7 929 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 SPEM1Q8N4L4 309 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 GPT2Q8TD30 523 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 TFAP2BQ92481 460 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 EZH1Q92800 747 aaPredicted RBP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 CNOT6LQ96LI5 555 aaKnown RBP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 KREMEN1Q96MU8 473 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 KLF16Q9BXK1 252 aaPredicted RBP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 INTS2Q9H0H0 1204 aaKnown RBP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 NUP62CLQ9H1M0 184 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 C2orf42Q9NWW7 574 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 TSPAN16Q9UKR8 245 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 KIAA1257Q9ULG3 409 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 FRYLO94915 3013 aa10.83□□□□□ -0.68
CCDC88C-206ENST00000553437 DMXL1Q9Y485 3027 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 E2F8A0AVK6 867 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 GFRA3O60609 400 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 PAPSS2O95340 614 aaPredicted RBP10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 NFATC1O95644 943 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 EGFP01133 1207 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 CYP17A1P05093 508 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 PAEPP09466 180 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 ATXN8OSP0DMR3 200 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 RARGP13631 454 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 CD19P15391 556 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 ERCC5P28715 1186 aaPredicted RBP10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 OPRD1P41143 372 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 CXCL12P48061 93 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 CCR3P51677 355 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 ZNF132P52740 706 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 AMPD2Q01433 879 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 PDE4CQ08493 712 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 GRSF1Q12849 480 aaKnown RBP eCLIP10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 MMRN1Q13201 1228 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 DHCR24Q15392 516 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 GOLGA7BQ2TAP0 167 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 PM20D1Q6GTS8 502 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 PKN3Q6P5Z2 889 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 KLHDC10Q6PID8 442 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 RHBDF2Q6PJF5 856 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 TMEM270Q6UE05 265 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 BHLHA9Q7RTU4 235 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 PPM1KQ8N3J5 372 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 ZNF276Q8N554 614 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 ZBTB44Q8NCP5 570 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 NKD2Q969F2 451 aaPredicted RBP10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 IPO9Q96P70 1041 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 P2RY13Q9BPV8 354 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 SEMA4AQ9H3S1 761 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 ZSCAN32Q9NX65 697 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 CNTN6Q9UQ52 1028 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 PCDHB4Q9Y5E5 795 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 CACNA1GO43497 2377 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 GREB1Q4ZG55 1949 aa10.82□□□□□ -0.68
CCDC88C-206ENST00000553437 KIF26AQ9ULI4 1882 aaPredicted RBP10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 K7ESF4 209 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 SLC9A3R1O14745 358 aaPredicted RBP10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 XPO1O14980 1071 aaKnown RBP10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 MDM4O15151 490 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 LILRB5O75023 590 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 CALCAP01258 141 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 DRD1P21728 446 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 HOXC13P31276 330 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 ATP5C1P36542 298 aaKnown RBP10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 PLA2G4AP47712 749 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 PSEN1P49768 467 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 BCAT1P54687 386 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 FOXK2Q01167 660 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 NR1H3Q13133 447 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 CNGA2Q16280 664 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 LCLAT1Q6UWP7 414 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 RBM43Q6ZSC3 357 aaKnown RBP10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 HTR3DQ70Z44 454 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 BBS7Q8IWZ6 715 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 RBBP8NLQ8NC74 664 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms