RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 LARP1BQ659C4 914 aaKnown RBP9.65□□□□□ -0.86
SYNE2-209ENST00000553308 TRAPPC11Q7Z392 1133 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 TRMT11Q7Z4G4 463 aaKnown RBP9.65□□□□□ -0.86
SYNE2-209ENST00000553308 RABEPKQ7Z6M1 372 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 TMEM25Q86YD3 366 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 WDR49Q8IV35 697 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 NUP93Q8N1F7 819 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 TRIML1Q8N9V2 468 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 HPS3Q969F9 1004 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 OTUB2Q96DC9 234 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 KCNK16Q96T55 309 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 B3GNT5Q9BYG0 378 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 SLC6A17Q9H1V8 727 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 CCSER2Q9H7U1 834 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 CD248Q9HCU0 757 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 SPHK2Q9NRA0 654 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 PANK4Q9NVE7 773 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 DNAAF2Q9NVR5 837 aaKnown RBP9.65□□□□□ -0.86
SYNE2-209ENST00000553308 HSPBP1Q9NZL4 362 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 DEC1Q9P2X7 70 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 SMC3Q9UQE7 1217 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 SH3BP1Q9Y3L3 701 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 GPSM3Q9Y4H4 160 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 GON4LQ3T8J9 2241 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 ASPMQ8IZT6 3477 aa9.65□□□□□ -0.86
SYNE2-209ENST00000553308 MYO18AQ92614 2054 aaKnown RBP9.65□□□□□ -0.87
SYNE2-209ENST00000553308 A0A1W2PQD8 194 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 KIAA0391O15091 583 aaKnown RBP9.64□□□□□ -0.87
SYNE2-209ENST00000553308 TACC1O75410 805 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 RTN3O95197 1032 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-209ENST00000553308 CST3P01034 146 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-209ENST00000553308 FTH1P19P0C7X4 201 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 DLATP10515 647 aaKnown RBP9.64□□□□□ -0.87
SYNE2-209ENST00000553308 HOXD13P35453 343 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 TXLNAP40222 546 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 TNNC1P63316 161 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 SURF1Q15526 300 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 TRIP6Q15654 476 aaKnown RBP9.64□□□□□ -0.87
SYNE2-209ENST00000553308 PLEKHG6Q3KR16 790 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 WDR72Q3MJ13 1102 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 C8orf34Q49A92 452 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 HECTD3Q5T447 861 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 GRAMD4Q6IC98 578 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 FAM35AQ86V20 835 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 NAXDQ8IW45 347 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 CHPFQ8IZ52 775 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 PNPLA1Q8N8W4 532 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 B3GALNT2Q8NCR0 500 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 PDZD8Q8NEN9 1154 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 SCAMP5Q8TAC9 235 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 KCNV2Q8TDN2 545 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 IPO4Q8TEX9 1081 aaKnown RBP9.64□□□□□ -0.87
SYNE2-209ENST00000553308 ADAMTS14Q8WXS8 1223 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 OVCA2Q8WZ82 227 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 TRIM9Q9C026 710 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 DNAJC17Q9NVM6 304 aaKnown RBP9.64□□□□□ -0.87
SYNE2-209ENST00000553308 GMIPQ9P107 970 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 CHORDC1Q9UHD1 332 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-209ENST00000553308 RAD54BQ9Y620 910 aa9.64□□□□□ -0.87
SYNE2-209ENST00000553308 VPS37CA5D8V6 355 aaPredicted RBP9.63□□□□□ -0.87
SYNE2-209ENST00000553308 A8MXQ7 604 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 PRRT4C9JH25 899 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 NEDD8-MDP1E9PL57 170 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 ZNF217O75362 1048 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 SYPP08247 313 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 TNNI1P19237 187 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 MAOBP27338 520 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 STAT6P42226 847 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 PGFP49763 221 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 TUBP50607 506 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 SLC5A3P53794 718 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 MYL6P60660 151 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 HNRNPDQ14103 355 aaKnown RBP9.63□□□□□ -0.87
SYNE2-209ENST00000553308 COL28A1Q2UY09 1125 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 PREPLQ4J6C6 727 aaPredicted RBP9.63□□□□□ -0.87
SYNE2-209ENST00000553308 SOWAHCQ53LP3 525 aaPredicted RBP9.63□□□□□ -0.87
SYNE2-209ENST00000553308 FAM173BQ6P4H8 233 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 TOGARAM2Q6ZUX3 1019 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 PDZD3Q86UT5 571 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 RGL4Q8IZJ4 473 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 RDH13Q8NBN7 331 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 SPRYD3Q8NCJ5 442 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 MRGPRX1Q96LB2 322 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 CGRRF1Q99675 332 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 GABRG3Q99928 467 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 DUSP9Q99956 384 aaKnown RBP9.63□□□□□ -0.87
SYNE2-209ENST00000553308 PANK2Q9BZ23 570 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 SMYD3Q9H7B4 428 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 CACNA2D2Q9NY47 1150 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 NXF1Q9UBU9 619 aaKnown RBP9.63□□□□□ -0.87
SYNE2-209ENST00000553308 STARD13Q9Y3M8 1113 aa9.63□□□□□ -0.87
SYNE2-209ENST00000553308 SRPRBQ9Y5M8 271 aaKnown RBP9.63□□□□□ -0.87
SYNE2-209ENST00000553308 PLXNB3Q9ULL4 1909 aa9.62□□□□□ -0.87
SYNE2-209ENST00000553308 ZBTB24O43167 697 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-209ENST00000553308 CACNG3O60359 315 aa9.62□□□□□ -0.87
SYNE2-209ENST00000553308 GREM1O60565 184 aa9.62□□□□□ -0.87
SYNE2-209ENST00000553308 NDUFS2O75306 463 aa9.62□□□□□ -0.87
SYNE2-209ENST00000553308 ZDHHC11BP0C7U3 371 aa9.62□□□□□ -0.87
SYNE2-209ENST00000553308 TYRP14679 529 aa9.62□□□□□ -0.87
SYNE2-209ENST00000553308 CEBPZQ03701 1054 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms