RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 SEC23BQ15437 767 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 P3H1Q32P28 736 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 CERCAMQ5T4B2 595 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 DRICH1Q6PGQ1 229 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 FAM111BQ6SJ93 734 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 TMEM108Q6UXF1 575 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 RPAP2Q8IXW5 612 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 FSIP1Q8NA03 581 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 TXNDC5Q8NBS9 432 aaKnown RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 CUL5Q93034 780 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 KTI12Q96EK9 354 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 APOPT1Q96IL0 206 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 PHACTR3Q96KR7 559 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 PNKPQ96T60 521 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 CPPED1Q9BRF8 314 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 C12orf65Q9H3J6 166 aaKnown RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 CXorf36Q9H7Y0 433 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 GBA2Q9HCG7 927 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 EIF2B3Q9NR50 452 aaKnown RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 PLA2G3Q9NZ20 509 aa6.42□□□□□ -1.38
SCFD1-208ENST00000553278 MRPS17Q9Y2R5 130 aaKnown RBP6.42□□□□□ -1.38
SCFD1-208ENST00000553278 DRGXA6NNA5 263 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 AP3D1O14617 1153 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 ANP32CO43423 234 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 PTP4A3O75365 173 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 PRSS23O95084 383 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 SPATA31D3P0C874 917 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 HGFP14210 728 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 GNAT2P19087 354 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 GCSHP23434 173 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 ARL3P36405 182 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 GATMP50440 423 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 MAMLD1Q13495 774 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 CCNIQ14094 377 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 E2F2Q14209 437 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 RILPL1Q5EBL4 403 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 ZNF484Q5JVG2 852 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 ATF7IPQ6VMQ6 1270 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 SPATA31D4Q6ZUB0 917 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 SLC15A3Q8IY34 581 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 DIS3L2Q8IYB7 885 aaKnown RBP6.41□□□□□ -1.38
SCFD1-208ENST00000553278 FSTL5Q8N475 847 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-208ENST00000553278 NSUN7Q8NE18 718 aaKnown RBP6.41□□□□□ -1.38
SCFD1-208ENST00000553278 POC1BQ8TC44 478 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 GPR20Q99678 358 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 SERHL2Q9H4I8 314 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 CCDC134Q9H6E4 229 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 MSL2Q9HCI7 577 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 SH3GLB2Q9NR46 395 aa6.41□□□□□ -1.38
SCFD1-208ENST00000553278 NDRG4Q9ULP0 352 aaKnown RBP6.41□□□□□ -1.38
SCFD1-208ENST00000553278 FAM170AA1A519 330 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 GTPBP1O00178 669 aaKnown RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 TSPAN4O14817 238 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 P4HA2O15460 535 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 SGPL1O95470 568 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 F9P00740 461 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 LMNAP02545 664 aaKnown RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 YY1P25490 414 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 PSMA4P25789 261 aaKnown RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 ITGB7P26010 798 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 PPIFP30405 207 aaKnown RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 NTSR1P30989 418 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 ACTN2P35609 894 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 CHN2P52757 468 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 RAC3P60763 192 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 CAMK1Q14012 370 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 PSMD6Q15008 389 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 NFIL3Q16649 462 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 TBC1D10BQ4KMP7 808 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 C1QTNF12Q5T7M4 302 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 FAM69AQ5T7M9 428 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 SNX30Q5VWJ9 437 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 LIPMQ5VYY2 423 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 SFRP4Q6FHJ7 346 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 H1FNTQ75WM6 255 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 ZFPM1Q8IX07 1006 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 LRRC71Q8N4P6 559 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 FAM71DQ8N9W8 422 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 SUN3Q8TAQ9 357 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 CREB3L4Q8TEY5 395 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 NSUN4Q96CB9 384 aaKnown RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 MARS2Q96GW9 593 aaKnown RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 RBM17Q96I25 401 aaKnown RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 LCORQ96JN0 433 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 SIGLEC10Q96LC7 697 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 WDR24Q96S15 920 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 EIF3CQ99613 913 aaKnown RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 FUZQ9BT04 418 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 SYNCQ9H7C4 482 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 GCM1Q9NP62 436 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 PLSCR4Q9NRQ2 329 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 DIAPH3Q9NSV4 1193 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 TBC1D14Q9P2M4 693 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 NFKBIL1Q9UBC1 381 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-208ENST00000553278 NEU2Q9Y3R4 380 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 IRAK3Q9Y616 596 aa6.4□□□□□ -1.38
SCFD1-208ENST00000553278 PABPN1LA6NDY0 278 aaKnown RBP6.39□□□□□ -1.39
SCFD1-208ENST00000553278 E7ENX8 843 aa6.39□□□□□ -1.39
SCFD1-208ENST00000553278 H3BNC9 293 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms