RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 CSH1P0DML2 217 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 CSH2P0DML3 217 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 BDNFP23560 247 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 TAF12Q16514 161 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 CAMKK1Q8N5S9 505 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 GIPC2Q8TF65 315 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 CNOT6LQ96LI5 555 aaKnown RBP16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 B3GNT5Q9BYG0 378 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 HPS4Q9NQG7 708 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 SLC8A2Q9UPR5 921 aa16.67■□□□□ 0.26
CHMP1A-206ENST00000549139 C4orf47A7E2U8 309 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 TRDMT1O14717 391 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 LAMA5O15230 3695 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 CILPO75339 1184 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 HMGA1P17096 107 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 TRIM21P19474 475 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 PTMSP20962 102 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 GRIK1P39086 918 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 GPR15P49685 360 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 NOVA1P51513 510 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 DDR2Q16832 855 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 ARHGAP15Q53QZ3 475 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 ACOT1Q86TX2 421 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 CREBRFQ8IUR6 639 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 FAM114A1Q8IWE2 563 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 EHBP1Q8NDI1 1231 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 LMO3Q8TAP4 145 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 ENOX1Q8TC92 643 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 WHAMMQ8TF30 809 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 SPATA17Q96L03 361 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 EDEM2Q9BV94 578 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 NT5C1AQ9BXI3 368 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 SLC46A2Q9BY10 475 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 ELOVL4Q9GZR5 314 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 DNAI2Q9GZS0 605 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 SMG9Q9H0W8 520 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 FBRSL1Q9HCM7 1045 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 GKN1Q9NS71 199 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 ANO10Q9NW15 660 aa16.66■□□□□ 0.26
CHMP1A-206ENST00000549139 ITPR1Q14643 2758 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 TRIM66O15016 1216 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 RNF40O75150 1001 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 NOL4O94818 638 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 CYP4F8P98187 520 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 GRSF1Q12849 480 aaKnown RBP eCLIP16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 SDHAF4Q5VUM1 108 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 PAQR9Q6ZVX9 377 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 SCN4BQ8IWT1 228 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 C8orf48Q96LL4 319 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 MYRFLQ96LU7 910 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 UXTQ9UBK9 157 aaPredicted RBP16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 HMGXB4Q9UGU5 601 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 ATP8B3O60423 1300 aa16.65■□□□□ 0.26
CHMP1A-206ENST00000549139 NBEAQ8NFP9 2946 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 BCLAF3A2AJT9 711 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 DCLK1O15075 740 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 TOP3BO95985 862 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 EGFP01133 1207 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 CD58P19256 250 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 SPINK2P20155 84 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 TBXAS1P24557 533 aaPredicted RBP16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 ANXA13P27216 316 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 CDC25CP30307 473 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 MTIF2P46199 727 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 YWHAEP62258 255 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 ZNF252P-AS1Q0IIN9 211 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 CUL2Q13617 745 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 RUNX3Q13761 415 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 ACAP1Q15027 740 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 STX1AQ16623 288 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 GATA6Q92908 595 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 TRMT2BQ96GJ1 504 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 NT5C1BQ96P26 610 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 HHIPQ96QV1 700 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 TWNKQ96RR1 684 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 ADAM33Q9BZ11 813 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 CISHQ9NSE2 258 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 THG1LQ9NWX6 298 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 PI4KAP42356 2102 aa16.64■□□□□ 0.25
CHMP1A-206ENST00000549139 MYO16Q9Y6X6 1858 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 LNP1A1A4G5 178 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 CLDN5O00501 218 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 CAVIN2O95810 425 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 F11P03951 625 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 CREB5Q02930 508 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 LRMPQ12912 555 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 FOXC1Q12948 553 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 ORC1Q13415 861 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 MAN2A1Q16706 1144 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 KLHL40Q2TBA0 621 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 SH3PXD2AQ5TCZ1 1133 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 NAIF1Q69YI7 327 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 TRIM68Q6AZZ1 485 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 CAVIN1Q6NZI2 390 aaKnown RBP16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 TMEM150AQ86TG1 271 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 CMTM8Q8IZV2 173 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 FUKQ8N0W3 1084 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 RIN3Q8TB24 985 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 CYFIP2Q96F07 1278 aa16.63■□□□□ 0.25
CHMP1A-206ENST00000549139 TMEM176AQ96HP8 235 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms