RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 VEGFAP15692 232 aaPredicted RBP4.83□□□□□ -1.64
VPS29-205ENST00000548539 EGR1P18146 543 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 GATA3P23771 443 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 NTSR1P30989 418 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 SERPINF1P36955 418 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 ABCG1P45844 678 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 SP2Q02086 613 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 MAPK7Q13164 816 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 TUBB3Q13509 450 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 PRKG1Q13976 671 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 PTK2BQ14289 1009 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 TAF5Q15542 800 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 MAPKAPK3Q16644 382 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 BEAN1Q3B7T3 259 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 SPDYE7PQ495Y7 208 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 DEPDC1Q5TB30 811 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 MANEALQ5VSG8 457 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 ABHD17BQ5VST6 288 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 SULT6B1Q6IMI4 303 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 LIN54Q6MZP7 749 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 JMJD6Q6NYC1 403 aaPredicted RBP4.83□□□□□ -1.64
VPS29-205ENST00000548539 SUGP1Q8IWZ8 645 aaKnown RBP4.83□□□□□ -1.64
VPS29-205ENST00000548539 ZBTB45Q96K62 511 aaPredicted RBP4.83□□□□□ -1.64
VPS29-205ENST00000548539 SLC25A32Q9H2D1 315 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 EPS8L2Q9H6S3 715 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 DKK2Q9UBU2 259 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 CAPN11Q9UMQ6 739 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 SSX2IPQ9Y2D8 614 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 GPR52Q9Y2T5 361 aa4.83□□□□□ -1.64
VPS29-205ENST00000548539 COL3A1P02461 1466 aaPredicted RBP4.82□□□□□ -1.64
VPS29-205ENST00000548539 TRGV11A0A075B6L2 103 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 FCHO1O14526 889 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 PPM1DO15297 605 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 TRIAP1O43715 76 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 IGLV2-14P01704 120 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 GYS1P13807 737 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 MST1P26927 711 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 VAV2P52735 878 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 HLXQ14774 488 aaPredicted RBP4.82□□□□□ -1.64
VPS29-205ENST00000548539 MRNIPQ6NTE8 343 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 USP17L6PQ6QN14 398 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 ZNF366Q8N895 744 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 ZNF384Q8TF68 577 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 TRAPPC12Q8WVT3 735 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 NELL2Q99435 816 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 DUSP26Q9BV47 211 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 TMEM120AQ9BXJ8 343 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 KRTAP1-5Q9BYS1 174 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 TPSD1Q9BZJ3 242 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 UNKLQ9H9P5 680 aaKnown RBP4.82□□□□□ -1.64
VPS29-205ENST00000548539 GALNT9Q9HCQ5 603 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 ITM2CQ9NQX7 267 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 SAGE1Q9NXZ1 904 aa4.82□□□□□ -1.64
VPS29-205ENST00000548539 RGS17Q9UGC6 210 aaPredicted RBP4.82□□□□□ -1.64
VPS29-205ENST00000548539 MARCH11A6NNE9 402 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 M0R3H8 397 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 AGPSO00116 658 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 IPO5O00410 1097 aaKnown RBP4.81□□□□□ -1.64
VPS29-205ENST00000548539 CD3EAPO15446 510 aaKnown RBP4.81□□□□□ -1.64
VPS29-205ENST00000548539 RBMXL2O75526 392 aaKnown RBP4.81□□□□□ -1.64
VPS29-205ENST00000548539 CDKL5O76039 1030 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 VNN1O95497 513 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 HLA-DOAP06340 250 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 DHRS4L1P0CG22 281 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 SRGAP2BP0DMP2 458 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 ARP10275 920 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 PPP3CBP16298 524 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 DDX6P26196 483 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS29-205ENST00000548539 PPIFP30405 207 aaKnown RBP4.81□□□□□ -1.64
VPS29-205ENST00000548539 NHLH1Q02575 133 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 GPS1Q13098 491 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 EIF2B5Q13144 721 aaKnown RBP4.81□□□□□ -1.64
VPS29-205ENST00000548539 MPP3Q13368 585 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 LY6KQ17RY6 165 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 SLC5A9Q2M3M2 681 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 ICE2Q659A1 982 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 ARL6IP4Q66PJ3 421 aaKnown RBP4.81□□□□□ -1.64
VPS29-205ENST00000548539 KRTAP5-11Q6L8G4 156 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 GATAD2AQ86YP4 633 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 OR1N1Q8NGS0 311 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 SLC30A5Q8TAD4 765 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 FAM136AQ96C01 138 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 GRAMD1AQ96CP6 724 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 ADAM2Q99965 735 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 ISCA1Q9BUE6 129 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 KATNAL1Q9BW62 490 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 ACTRT3Q9BYD9 372 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 FAM83DQ9H4H8 585 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 ZBTB26Q9HCK0 441 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 SNX14Q9Y5W7 946 aa4.81□□□□□ -1.64
VPS29-205ENST00000548539 SPATA31A3Q5VYP0 1347 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 ADM5C9JUS6 153 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 PCDH17O14917 1159 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 CCNT2O60583 730 aaKnown RBP4.8□□□□□ -1.64
VPS29-205ENST00000548539 ITGA5P08648 1049 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 NPPBP16860 134 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 PRKAR1BP31321 381 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 MAPK9P45984 424 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 CCT5P48643 541 aa4.8□□□□□ -1.64
VPS29-205ENST00000548539 PDE6CP51160 858 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms