RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 PLEKHM3Q6ZWE6 761 aa13.22□□□□□ -0.29
PTCH1-212ENST00000546744 SLC22A9Q8IVM8 553 aa13.22□□□□□ -0.29
PTCH1-212ENST00000546744 GRAPLQ8TC17 118 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-212ENST00000546744 GRIP2Q9C0E4 1043 aa13.22□□□□□ -0.29
PTCH1-212ENST00000546744 ANKEF1Q9NU02 776 aa13.22□□□□□ -0.29
PTCH1-212ENST00000546744 NMRK1Q9NWW6 199 aa13.22□□□□□ -0.29
PTCH1-212ENST00000546744 CROTQ9UKG9 612 aa13.22□□□□□ -0.29
PTCH1-212ENST00000546744 ARIH1Q9Y4X5 557 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-212ENST00000546744 TAF4O00268 1085 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 HUS1O60921 280 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 TSPAN9O75954 239 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 MFN2O95140 757 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 IL12AP29459 219 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 HOXA13P31271 388 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-212ENST00000546744 UBXN2AP68543 259 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 ERFEQ4G0M1 354 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 FAM98BQ52LJ0 330 aaKnown RBP13.21□□□□□ -0.29
PTCH1-212ENST00000546744 DUPD1Q68J44 220 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 ACMSDQ8TDX5 336 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 CPA5Q8WXQ8 436 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 AGBL1Q96MI9 1066 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 ASB2Q96Q27 587 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 SLC4A9Q96Q91 983 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 GINS4Q9BRT9 223 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 ZBED2Q9BTP6 218 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 VPS45Q9NRW7 570 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 STK39Q9UEW8 545 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 MAGEB16A2A368 324 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 C5orf60A6NFR6 353 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 DCAF8L1A6NGE4 600 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 FAM196BA6NMK8 535 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 USP17L10C9JJH3 530 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 DDX3XO00571 662 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTCH1-212ENST00000546744 ATP9BO43861 1147 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 MAGEC1O60732 1142 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 CSF1RP07333 972 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 ITGA4P13612 1032 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 GRB10Q13322 594 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 NCOA4Q13772 614 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 SLC15A2Q16348 729 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 LINC00116Q8NCU8 138 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 MTERF3Q96E29 417 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 QKIQ96PU8 341 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTCH1-212ENST00000546744 PACSIN1Q9BY11 444 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 NIF3L1Q9GZT8 377 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 GMEB1Q9Y692 573 aa13.21□□□□□ -0.29
PTCH1-212ENST00000546744 TRIM13O60858 407 aa13.21□□□□□ -0.3
PTCH1-212ENST00000546744 MAPTP10636 758 aaKnown RBP13.21□□□□□ -0.3
PTCH1-212ENST00000546744 GPD1P21695 349 aa13.21□□□□□ -0.3
PTCH1-212ENST00000546744 MGAT5Q09328 741 aa13.21□□□□□ -0.3
PTCH1-212ENST00000546744 SCARF1Q14162 830 aa13.21□□□□□ -0.3
PTCH1-212ENST00000546744 RWDD4Q6NW29 188 aaKnown RBP13.21□□□□□ -0.3
PTCH1-212ENST00000546744 SH3RF3Q8TEJ3 882 aaPredicted RBP13.21□□□□□ -0.3
PTCH1-212ENST00000546744 COMMD8Q9NX08 183 aa13.21□□□□□ -0.3
PTCH1-212ENST00000546744 BTBD3Q9Y2F9 522 aa13.21□□□□□ -0.3
PTCH1-212ENST00000546744 RWDD3Q9Y3V2 267 aa13.21□□□□□ -0.3
PTCH1-212ENST00000546744 TAF6LQ9Y6J9 622 aa13.21□□□□□ -0.3
PTCH1-212ENST00000546744 AHDC1Q5TGY3 1603 aaPredicted RBP13.21□□□□□ -0.3
PTCH1-212ENST00000546744 FOXN3O00409 490 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 ADCY6O43306 1168 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 MYBP10242 640 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 CYP2D6P10635 497 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 HOXB8P17481 243 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 XPAP23025 273 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 PTGER2P43116 358 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 MYL6P60660 151 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 C1DQ13901 141 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 KCNT1Q5JUK3 1230 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 INTS5Q6P9B9 1019 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 IKBIPQ70UQ0 350 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 NIM1KQ8IY84 436 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 EFHBQ8N7U6 833 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 PIWIL2Q8TC59 973 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 NSUN6Q8TEA1 469 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 ZNF669Q96BR6 464 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 MOV10Q9HCE1 1003 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 CLIC5Q9NZA1 410 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 MAGED2Q9UNF1 606 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 EDF1O60869 148 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 SOAT2O75908 522 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 RXRBP28702 533 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 ACADVLP49748 655 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 RPS6P62753 249 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 ST3GAL1Q11201 340 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 LPIN1Q14693 890 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 SMIM5Q71RC9 77 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 GIPC3Q8TF64 312 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 NARFQ9UHQ1 456 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 SIK3Q9Y2K2 1263 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 CENPXA8MT69 81 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 WBP4O75554 376 aaKnown RBP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 ANXA9O76027 345 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 CAPN1P07384 714 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 PBX1P40424 430 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 RAB25P57735 213 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 NSUN2Q08J23 767 aaKnown RBP eCLIP13.2□□□□□ -0.3
PTCH1-212ENST00000546744 KCTD2Q14681 263 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 BROXQ5VW32 411 aa13.2□□□□□ -0.3
PTCH1-212ENST00000546744 XRRA1Q6P2D8 792 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms