RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 TAF10Q12962 218 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 MAPRE1Q15691 268 aaKnown RBP13.58□□□□□ -0.24
SCAF11-208ENST00000546534 C10orf76Q5T2E6 689 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 BTBD8Q5XKL5 378 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 TOGARAM2Q6ZUX3 1019 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 SLCO6A1Q86UG4 719 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 DDX42Q86XP3 938 aaKnown RBP eCLIP13.58□□□□□ -0.24
SCAF11-208ENST00000546534 RGL4Q8IZJ4 473 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 LARP4BQ92615 738 aaKnown RBP13.58□□□□□ -0.24
SCAF11-208ENST00000546534 ERLEC1Q96DZ1 483 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 PCED1BQ96HM7 432 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 ZNF419Q96HQ0 510 aaPredicted RBP13.58□□□□□ -0.24
SCAF11-208ENST00000546534 C8orf48Q96LL4 319 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 MTMR12Q9C0I1 747 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 CD248Q9HCU0 757 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 EHD2Q9NZN4 543 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 DEC1Q9P2X7 70 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 TRIM66O15016 1216 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 HOXC11O43248 304 aaPredicted RBP13.57□□□□□ -0.24
SCAF11-208ENST00000546534 CBFA2T3O75081 653 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 LDHAP00338 332 aaKnown RBP13.57□□□□□ -0.24
SCAF11-208ENST00000546534 TMEM191BP0C7N4 346 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 GRIN1Q05586 938 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 MYO1EQ12965 1108 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 TDRD10Q5VZ19 366 aaKnown RBP13.57□□□□□ -0.24
SCAF11-208ENST00000546534 EGFLAMQ63HQ2 1017 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 DYMQ7RTS9 669 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 KRI1Q8N9T8 703 aaKnown RBP13.57□□□□□ -0.24
SCAF11-208ENST00000546534 TERB1Q8NA31 727 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 RASSF8Q8NHQ8 419 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 MYCBPAPQ8TBZ2 947 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 OTUB2Q96DC9 234 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 HPDLQ96IR7 371 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 ZFRQ96KR1 1074 aaKnown RBP13.57□□□□□ -0.24
SCAF11-208ENST00000546534 ACCSQ96QU6 501 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 ACOX2Q99424 681 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 FAM124BQ9H5Z6 455 aaPredicted RBP13.57□□□□□ -0.24
SCAF11-208ENST00000546534 CD93Q9NPY3 652 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 TMEM30AQ9NV96 361 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 EXOC7Q9UPT5 735 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 APC2O95996 2303 aa13.57□□□□□ -0.24
SCAF11-208ENST00000546534 SMG1Q96Q15 3661 aaKnown RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 MYOFQ9NZM1 2061 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 EIF4E1BA6NMX2 242 aaKnown RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 ZBTB24O43167 697 aaPredicted RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 WARSP23381 471 aaKnown RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 MAOBP27338 520 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 CACNA2D1P54289 1103 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 GRIK2Q13002 908 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 PREPLQ4J6C6 727 aaPredicted RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 MDH1BQ5I0G3 518 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 SYCP2LQ5T4T6 812 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 L1TD1Q5T7N2 865 aaKnown RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 GLRX5Q86SX6 157 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 TMEM25Q86YD3 366 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 IPO4Q8TEX9 1081 aaKnown RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 NOC3LQ8WTT2 800 aaKnown RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 SLC6A17Q9H1V8 727 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 MRPL44Q9H9J2 332 aaKnown RBP13.56□□□□□ -0.24
SCAF11-208ENST00000546534 SPHK2Q9NRA0 654 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 TBC1D7Q9P0N9 293 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 SUSD2Q9UGT4 822 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 PCOLCE2Q9UKZ9 415 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 STARD13Q9Y3M8 1113 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 PTPRJQ12913 1337 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 CEP192Q8TEP8 1941 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 PLXNB3Q9ULL4 1909 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 ACACAQ13085 2346 aa13.56□□□□□ -0.24
SCAF11-208ENST00000546534 COCHO43405 550 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 NDUFS2O75306 463 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 GNSP15586 552 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 GARTP22102 1010 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 DDIT3P35638 169 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 IFRD2Q12894 506 aaPredicted RBP13.55□□□□□ -0.24
SCAF11-208ENST00000546534 ANO4Q32M45 955 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 NUDT18Q6ZVK8 323 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 HS2ST1Q7LGA3 356 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 BBS7Q8IWZ6 715 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 CHPFQ8IZ52 775 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 OR5B17Q8NGF7 314 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 WBP2Q969T9 261 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 ANKRD36BP1Q96IX9 119 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 SLITRK1Q96PX8 696 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 HS3ST6Q96QI5 342 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 CBWD1Q9BRT8 395 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 PCIF1Q9H4Z3 704 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 INTS13Q9NVM9 706 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 R3HCC1Q9Y3T6 440 aaKnown RBP13.55□□□□□ -0.24
SCAF11-208ENST00000546534 NME7Q9Y5B8 376 aa13.55□□□□□ -0.24
SCAF11-208ENST00000546534 MYO18AQ92614 2054 aaKnown RBP13.54□□□□□ -0.24
SCAF11-208ENST00000546534 FLNBO75369 2602 aaKnown RBP13.54□□□□□ -0.24
SCAF11-208ENST00000546534 LOC400499M0QZD8 3231 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 YWHAQP27348 245 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 LONP1P36776 959 aaKnown RBP13.54□□□□□ -0.24
SCAF11-208ENST00000546534 CASP5P51878 434 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 WDR45BQ5MNZ6 344 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 C6orf132Q5T0Z8 1188 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 GRAMD4Q6IC98 578 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 SDE2Q6IQ49 451 aa13.54□□□□□ -0.24
SCAF11-208ENST00000546534 TMPRSS7Q7RTY8 843 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms