RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TMEM191CA6NGB0 347 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 EPOPA6NHQ4 379 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 MYO1FO00160 1098 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 DPYSL4O14531 572 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 KIF5CO60282 957 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 LTFP02788 710 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 ZDHHC11BP0C7U3 371 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 HOXB8P17481 243 aaPredicted RBP16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 SLC1A1P43005 524 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 PTPN9P43378 593 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 TWF1Q12792 350 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 MTA1Q13330 715 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 PIGHQ14442 188 aaPredicted RBP16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 CYP4A22Q5TCH4 519 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 SCUBE3Q8IX30 993 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 EFHBQ8N7U6 833 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 ARHGEF26Q96DR7 871 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 ZNF512Q96ME7 567 aaPredicted RBP16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 SLC2A13Q96QE2 648 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 SFXN1Q9H9B4 322 aa16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 OLA1Q9NTK5 396 aaKnown RBP16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 PRRC2BQ5JSZ5 2229 aaKnown RBP16.79■□□□□ 0.28
PRPF40A-212ENST00000545856 RCCD1A6NED2 376 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 GABBR2O75899 941 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 NOS2P35228 1153 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 MATKP42679 507 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 EPHA5P54756 1037 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 KLHDC10Q6PID8 442 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 GPRIN1Q7Z2K8 1008 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 TTC9BQ8N6N2 239 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 STKLD1Q8NE28 680 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 FBXO32Q969P5 355 aa16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.78■□□□□ 0.28
PRPF40A-212ENST00000545856 C2CD4BA6NLJ0 364 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 USP17L7P0C7H9 530 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 HMGA1P17096 107 aaKnown RBP16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 GPD1P21695 349 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 CDC25CP30307 473 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 SDC4P31431 198 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 NOP2P46087 812 aaKnown RBP16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 NRIP1P48552 1158 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 ZNF143P52747 638 aaPredicted RBP16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 NNTQ13423 1086 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 BHLHA9Q7RTU4 235 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 NT5C3BQ969T7 300 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 FAM149B1Q96BN6 582 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 PGAP3Q96FM1 320 aaPredicted RBP16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 MCEEQ96PE7 176 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 GCNAQ96QF7 691 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 CNPY3Q9BT09 278 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 PRKD2Q9BZL6 878 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 TTYH1Q9H313 450 aaPredicted RBP16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 LZTFL1Q9NQ48 299 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 METTL5Q9NRN9 209 aaKnown RBP16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.77■□□□□ 0.286e-9■■□□□ 13.2
PRPF40A-212ENST00000545856 TRPM5Q9NZQ8 1165 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 ANAPC7Q9UJX3 599 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 PAXBP1Q9Y5B6 917 aa16.77■□□□□ 0.28
PRPF40A-212ENST00000545856 GOLGA8SH3BPF8 625 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 F9P00740 461 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 RALAP11233 206 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 DDX6P26196 483 aaKnown RBP eCLIP16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 YWHAGP61981 247 aaKnown RBP eCLIP16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 COL19A1Q14993 1142 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 MSANTD2Q6P1R3 559 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 STRADAQ7RTN6 431 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 DNAJB7Q7Z6W7 309 aaPredicted RBP16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 TPCN2Q8NHX9 752 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 SCAMP5Q8TAC9 235 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 GAS2L1Q99501 681 aaPredicted RBP16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 DDX23Q9BUQ8 820 aaKnown RBP16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 ASAH2Q9NR71 780 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 TJP2Q9UDY2 1190 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 GUCA1BQ9UMX6 200 aa16.77■□□□□ 0.27
PRPF40A-212ENST00000545856 YJEFN3A6XGL0 299 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 E7ENQ6 273 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 CAPN9O14815 690 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 ATMINO43313 823 aaPredicted RBP16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 PROSCO94903 275 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 EPCAMP16422 314 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 PTPN2P17706 415 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 RFC1P35251 1148 aaPredicted RBP16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 PCK1P35558 622 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 GPR15P49685 360 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 KPNA1P52294 538 aaPredicted RBP16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 AIF1P55008 147 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 NAP1L1P55209 391 aaKnown RBP16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 TAF10Q12962 218 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 SLC25A52Q3SY17 297 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 ACBD5Q5T8D3 534 aaPredicted RBP16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 BSPRYQ5W0U4 402 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 BTBD8Q5XKL5 378 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 SLFN11Q7Z7L1 901 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 ADGRD2Q7Z7M1 963 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 KHSRPQ92945 711 aaKnown RBP eCLIP16.76■□□□□ 0.272e-7■■■□□ 15.9
PRPF40A-212ENST00000545856 COG5Q9UP83 839 aa16.76■□□□□ 0.27
PRPF40A-212ENST00000545856 MACROD2A1Z1Q3 448 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 MIF4GDA9UHW6 222 aaKnown RBP16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 ZNF197O14709 1029 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms