RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 HPS4Q9NQG7 708 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 PRMT8Q9NR22 394 aaPredicted RBP12.46□□□□□ -0.41
HDAC4-216ENST00000544989 GMIPQ9P107 970 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 CHORDC1Q9UHD1 332 aaPredicted RBP12.46□□□□□ -0.41
HDAC4-216ENST00000544989 MYH10P35580 1976 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 KIF26AQ9ULI4 1882 aaPredicted RBP12.46□□□□□ -0.42
HDAC4-216ENST00000544989 ZFHX4Q86UP3 3567 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 CACNA1IQ9P0X4 2223 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 HHLA1C9JL84 531 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 COCHO43405 550 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 TLR5O60602 858 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 LRRN2O75325 713 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 BEST1O76090 585 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 ADH1CP00326 375 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 SP9P0CG40 484 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 SETSIPP0DME0 302 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 RALAP11233 206 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 ATP5C1P36542 298 aaKnown RBP12.45□□□□□ -0.42
HDAC4-216ENST00000544989 SOX9P48436 509 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 BST2Q10589 180 aaKnown RBP12.45□□□□□ -0.42
HDAC4-216ENST00000544989 MTAPQ13126 283 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 PON2Q15165 354 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 PREPLQ4J6C6 727 aaPredicted RBP12.45□□□□□ -0.42
HDAC4-216ENST00000544989 TRIM68Q6AZZ1 485 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 TTC16Q8NEE8 873 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 NKD2Q969F2 451 aaPredicted RBP12.45□□□□□ -0.42
HDAC4-216ENST00000544989 CNOT6LQ96LI5 555 aaKnown RBP12.45□□□□□ -0.42
HDAC4-216ENST00000544989 RNF38Q9H0F5 515 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 CYLDQ9NQC7 956 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 LMBRD1Q9NUN5 540 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 CLIC5Q9NZA1 410 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 SH3BP1Q9Y3L3 701 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 PCDHGA2Q9Y5H1 932 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 USP3Q9Y6I4 520 aa12.45□□□□□ -0.42
HDAC4-216ENST00000544989 GTPBP10A4D1E9 387 aaKnown RBP12.44□□□□□ -0.42
HDAC4-216ENST00000544989 XPO1O14980 1071 aaKnown RBP12.44□□□□□ -0.42
HDAC4-216ENST00000544989 PAPSS2O95340 614 aaPredicted RBP12.44□□□□□ -0.42
HDAC4-216ENST00000544989 ARSAP15289 507 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 CD19P15391 556 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 GJA4P35212 333 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 CXCL12P48061 93 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 CSTF1Q05048 431 aaKnown RBP12.44□□□□□ -0.42
HDAC4-216ENST00000544989 LRMPQ12912 555 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 CCINQ13939 588 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 TMEM196Q5HYL7 178 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 TXNDC11Q6PKC3 985 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 TMEM270Q6UE05 265 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 UBR7Q8N806 425 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 TTC8Q8TAM2 541 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 LMO3Q8TAP4 145 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 ATRIPQ8WXE1 791 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 P2RY13Q9BPV8 354 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 FAM86C1Q9NVL1 165 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 ZSCAN32Q9NX65 697 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 SMPD4Q9NXE4 827 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 CFAP97Q9P2B7 532 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 DNMT3LQ9UJW3 386 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 LSM7Q9UK45 103 aaKnown RBP12.44□□□□□ -0.42
HDAC4-216ENST00000544989 PCDHB4Q9Y5E5 795 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 WNT6Q9Y6F9 365 aa12.44□□□□□ -0.42
HDAC4-216ENST00000544989 HELZP42694 1942 aaKnown RBP12.43□□□□□ -0.42
HDAC4-216ENST00000544989 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.43□□□□□ -0.42
HDAC4-216ENST00000544989 CYP26A1O43174 497 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 MBD3O95983 291 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 EIF2DP41214 584 aaKnown RBP12.43□□□□□ -0.42
HDAC4-216ENST00000544989 MTIF2P46199 727 aaKnown RBP12.43□□□□□ -0.42
HDAC4-216ENST00000544989 PLA2G4AP47712 749 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 MFAP3P55082 362 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 MEA1Q16626 185 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 GOLGA7BQ2TAP0 167 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 RAB41Q5JT25 222 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 LCLAT1Q6UWP7 414 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 GBP6Q6ZN66 633 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 CREBRFQ8IUR6 639 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 RIN3Q8TB24 985 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 CD101Q93033 1021 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 INTS2Q9H0H0 1204 aaKnown RBP12.43□□□□□ -0.42
HDAC4-216ENST00000544989 CCSER2Q9H7U1 834 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 LRRC4Q9HBW1 653 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 NAGPAQ9UK23 515 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 TSPAN16Q9UKR8 245 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 ZNF510Q9Y2H8 683 aa12.43□□□□□ -0.42
HDAC4-216ENST00000544989 PATJQ8NI35 1801 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 A0A1W2PQH9 124 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 O00370 1275 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 MED7O43513 233 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 ZBED1O96006 694 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 RARGP13631 454 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 HOXA6P31267 233 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 COG7P83436 770 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 ZXDBP98169 803 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 CNGA2Q16280 664 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 MAN2A1Q16706 1144 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 EXOC3L4Q17RC7 722 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 C10orf120Q5SQS8 335 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 NUDT18Q6ZVK8 323 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 GPRIN1Q7Z2K8 1008 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 PIGZQ86VD9 579 aa12.42□□□□□ -0.42
HDAC4-216ENST00000544989 MAML2Q8IZL2 1156 aaPredicted RBP12.42□□□□□ -0.42
HDAC4-216ENST00000544989 ADGRG2Q8IZP9 1017 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms