RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 SGO2Q562F6 1265 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 TRIM65Q6PJ69 517 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 BHLHA9Q7RTU4 235 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 SLC35F5Q8WV83 523 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 KCTD13Q8WZ19 329 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 NELL1Q92832 810 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 FBRSL1Q9HCM7 1045 aaKnown RBP12.04□□□□□ -0.48
YBX3-216ENST00000544622 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.04□□□□□ -0.48
YBX3-216ENST00000544622 CLIC5Q9NZA1 410 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 NDRG2Q9UN36 371 aaKnown RBP12.04□□□□□ -0.48
YBX3-216ENST00000544622 WNT6Q9Y6F9 365 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 FRYLO94915 3013 aa12.04□□□□□ -0.48
YBX3-216ENST00000544622 E2F8A0AVK6 867 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 GOLGA6L22H0YM25 854 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 TBX18O95935 607 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 MBL2P11226 248 aaPredicted RBP12.03□□□□□ -0.48
YBX3-216ENST00000544622 PON1P27169 355 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 RPL34P49207 117 aaKnown RBP12.03□□□□□ -0.48
YBX3-216ENST00000544622 PSEN1P49768 467 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 GALK1P51570 392 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 BCAT1P54687 386 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 MTAPQ13126 283 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 PON2Q15165 354 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 MAN2A1Q16706 1144 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 EXOC3L4Q17RC7 722 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 GOLGA7BQ2TAP0 167 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 ZNF528Q3MIS6 628 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 TMEM196Q5HYL7 178 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 DGKKQ5KSL6 1271 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 RHBDF2Q6PJF5 856 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 DDX42Q86XP3 938 aaKnown RBP eCLIP12.03□□□□□ -0.48
YBX3-216ENST00000544622 SCML4Q8N228 414 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 SYNPOQ8N3V7 929 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 ATOH1Q92858 354 aaPredicted RBP12.03□□□□□ -0.48
YBX3-216ENST00000544622 ATP2A3Q93084 1043 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 CRACR2AQ9BSW2 395 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 IER2Q9BTL4 223 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 KLF16Q9BXK1 252 aaPredicted RBP12.03□□□□□ -0.48
YBX3-216ENST00000544622 NDST4Q9H3R1 872 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 SIX2Q9NPC8 291 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 UBE2TQ9NPD8 197 aaPredicted RBP12.03□□□□□ -0.48
YBX3-216ENST00000544622 PRMT8Q9NR22 394 aaPredicted RBP12.03□□□□□ -0.48
YBX3-216ENST00000544622 SAMSN1Q9NSI8 373 aaKnown RBP12.03□□□□□ -0.48
YBX3-216ENST00000544622 SMPD4Q9NXE4 827 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 APEX2Q9UBZ4 518 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 FBXO4Q9UKT5 387 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.03□□□□□ -0.48
YBX3-216ENST00000544622 PCDHB4Q9Y5E5 795 aa12.03□□□□□ -0.48
YBX3-216ENST00000544622 ZFHX2Q9C0A1 2572 aaPredicted RBP12.03□□□□□ -0.48
YBX3-216ENST00000544622 HELZP42694 1942 aaKnown RBP12.02□□□□□ -0.49
YBX3-216ENST00000544622 MIA3Q5JRA6 1907 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 A0A1W2PQH9 124 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 BECN2A8MW95 431 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 MBD3O95983 291 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 SP9P0CG40 484 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 TDGF1P13385 188 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 RARGP13631 454 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 PRKCSHP14314 528 aaPredicted RBP12.02□□□□□ -0.49
YBX3-216ENST00000544622 ATP5C1P36542 298 aaKnown RBP12.02□□□□□ -0.49
YBX3-216ENST00000544622 GPD2P43304 727 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 IFNAR2P48551 515 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 SLC8A3P57103 927 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 AMPD2Q01433 879 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 APBA1Q02410 837 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 BST2Q10589 180 aaKnown RBP12.02□□□□□ -0.49
YBX3-216ENST00000544622 KCNMA1Q12791 1236 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 STILQ15468 1287 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 MEA1Q16626 185 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 VWA3BQ502W6 1294 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 TCP11X2Q5H9J9 407 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 CDKAL1Q5VV42 579 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 NAIF1Q69YI7 327 aaPredicted RBP12.02□□□□□ -0.49
YBX3-216ENST00000544622 FSTL4Q6MZW2 842 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 GJB7Q6PEY0 223 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 GBP6Q6ZN66 633 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 HTR3DQ70Z44 454 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 ENOSF1Q7L5Y1 443 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 CREBRFQ8IUR6 639 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 FAM114A1Q8IWE2 563 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 CPA6Q8N4T0 437 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 RBBP8NLQ8NC74 664 aaPredicted RBP12.02□□□□□ -0.49
YBX3-216ENST00000544622 UBA3Q8TBC4 463 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 EZH1Q92800 747 aaPredicted RBP12.02□□□□□ -0.49
YBX3-216ENST00000544622 WBP2Q969T9 261 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 OTUB2Q96DC9 234 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 FAM81BQ96LP2 452 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 TUBGCP2Q9BSJ2 902 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 RBM12Q9NTZ6 932 aaKnown RBP12.02□□□□□ -0.49
YBX3-216ENST00000544622 FAM86C1Q9NVL1 165 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 CFAP97Q9P2B7 532 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 HESX1Q9UBX0 185 aa12.02□□□□□ -0.49
YBX3-216ENST00000544622 A0A0A0MRY4 1105 aa12.01□□□□□ -0.49
YBX3-216ENST00000544622 LRRC10BA6NIK2 292 aa12.01□□□□□ -0.49
YBX3-216ENST00000544622 SLC9A3R1O14745 358 aaPredicted RBP12.01□□□□□ -0.49
YBX3-216ENST00000544622 PAPSS2O95340 614 aaPredicted RBP12.01□□□□□ -0.49
YBX3-216ENST00000544622 NFATC1O95644 943 aa12.01□□□□□ -0.49
YBX3-216ENST00000544622 ZBED1O96006 694 aa12.01□□□□□ -0.49
YBX3-216ENST00000544622 CALCAP01258 141 aa12.01□□□□□ -0.49
YBX3-216ENST00000544622 SETSIPP0DME0 302 aa12.01□□□□□ -0.49
YBX3-216ENST00000544622 CD19P15391 556 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms