RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 RDH11Q8TC12 318 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ELMO2Q96JJ3 720 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 TMEM39BQ9GZU3 492 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 PABPC3Q9H361 631 aaKnown RBP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 FANCFQ9NPI8 374 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 GDF3Q9NR23 364 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ADAMTS13Q76LX8 1427 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 SHPRHQ149N8 1683 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 C15orf38-AP3S2A0A0A6YYH1 394 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 H2AFXP16104 143 aaPredicted RBP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 MRPS5P82675 430 aaKnown RBP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 NSUN2Q08J23 767 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 FAM83EQ2M2I3 478 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 DCAF6Q58WW2 860 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 LYPLAL1Q5VWZ2 237 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 TDRD10Q5VZ19 366 aaKnown RBP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ARPINQ7Z6K5 226 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 DEFB123Q8N688 67 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 DYNLL2Q96FJ2 89 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 RBM15Q96T37 977 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 SLC40A1Q9NP59 571 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 TRPM5Q9NZQ8 1165 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 GABBR1Q9UBS5 961 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 HPSEQ9Y251 543 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 KCNN4O15554 427 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 GCLMP48507 274 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 CDH6P55285 790 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 RUNX1T1Q06455 604 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 CCNG2Q16589 344 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 RBBP8NLQ8NC74 664 aaPredicted RBP8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ACDQ96AP0 544 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 MS4A14Q96JA4 679 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 C11orf70Q9BRQ4 267 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 LRRC1Q9BTT6 524 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 PRKD2Q9BZL6 878 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ITGA11Q9UKX5 1188 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 SOX13Q9UN79 622 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 ZDHHC9Q9Y397 364 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 FMN2Q9NZ56 1722 aa8.08□□□□□ -1.12
VPS13D-211ENST00000543710 FAM205AQ6ZU69 1335 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 FAM47E-STBD1D6RA91 191 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 VWA5AO00534 786 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 CKMP06732 381 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 SLC16A2P36021 539 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 CCL23P55773 120 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 C16orf72Q14CZ0 275 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 SNRNP35Q16560 246 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 GJC2Q5T442 439 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 NOTUMQ6P988 496 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 GPR141Q7Z602 305 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 CPA6Q8N4T0 437 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 UHMK1Q8TAS1 419 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 ANKS1AQ92625 1134 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 MIR1-1HGQ9H1L0 117 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 MUC13Q9H3R2 512 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 AVENQ9NQS1 362 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 RAB21Q9UL25 225 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 NCANO14594 1321 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 PTPN4P29074 926 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 CRABP2P29373 138 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 MAPK9P45984 424 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 C1QBPQ07021 282 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 DNAJC3Q13217 504 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 PABPC1LQ4VXU2 614 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 FASTKD1Q53R41 847 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 HERC6Q8IVU3 1022 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 DDX1Q92499 740 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 LRRC39Q96DD0 335 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 GMCL1Q96IK5 515 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 NT5C1AQ9BXI3 368 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 DCLRE1BQ9H816 532 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 FBXO10Q9UK96 956 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 FAM32AQ9Y421 112 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 SETD1AO15047 1707 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 CFAP99D6REC4 459 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 AREL1O15033 823 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 ADCY6O43306 1168 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 USP1O94782 785 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 PEX19P40855 299 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 TRPC1P48995 793 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 VSNL1P62760 191 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 UAP1L1Q3KQV9 507 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 TMEM259Q4ZIN3 620 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 NBPF12Q5TAG4 269 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 MTSS1LQ765P7 747 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 SETD9Q8NE22 299 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 CEP70Q8NHQ1 597 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 ARMC7Q9H6L4 198 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 SHOC2Q9UQ13 582 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 TMX2Q9Y320 296 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 CFAP65Q6ZU64 1925 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 IRGMA1A4Y4 181 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 CD3EAPO15446 510 aaKnown RBP8.07□□□□□ -1.12
VPS13D-211ENST00000543710 SNAPC5O75971 98 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 SYN1P17600 705 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 MAPK7Q13164 816 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 ITPK1Q13572 414 aa8.07□□□□□ -1.12
VPS13D-211ENST00000543710 SCARA5Q6ZMJ2 495 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms