RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SV2CQ496J9 727 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 GKAP1Q5VSY0 366 aaPredicted RBP17.03■□□□□ 0.32
COL4A1-204ENST00000543140 MICALCLQ6ZW33 695 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 OSTM1Q86WC4 334 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 PQLC3Q8N755 202 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 PCDH19Q8TAB3 1148 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 GDAP1Q8TB36 358 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 STK32AQ8WU08 396 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 LGALS13Q9UHV8 139 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 XPO7Q9UIA9 1087 aaKnown RBP17.03■□□□□ 0.32
COL4A1-204ENST00000543140 Q9Y3F1 56 aa17.03■□□□□ 0.32
COL4A1-204ENST00000543140 RASA4BC9J798 803 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 CLDN5O00501 218 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 RASA4O43374 803 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 AKR1A1P14550 325 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 IBSPP21815 317 aaPredicted RBP17.02■□□□□ 0.32
COL4A1-204ENST00000543140 SSTR1P30872 391 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 PNPLA4P41247 253 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 AFF1P51825 1210 aaKnown RBP17.02■□□□□ 0.32
COL4A1-204ENST00000543140 SNX16P57768 344 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 FAM47CQ5HY64 1035 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 RGMBQ6NW40 437 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 SAPCD2Q86UD0 394 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 CACNA2D3Q8IZS8 1091 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 NME8Q8N427 588 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 CCDC33Q8N5R6 958 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 OTUD6BQ8N6M0 293 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 CABS1Q96KC9 395 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 TMEM51Q9NW97 253 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 TRPM7Q96QT4 1865 aa17.02■□□□□ 0.32
COL4A1-204ENST00000543140 C5orf60A6NFR6 353 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 ARL4CP56559 192 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 BCAR1P56945 870 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 GPX6P59796 221 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 PDK2Q15119 407 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 BBS9Q3SYG4 887 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 SPATS2Q86XZ4 545 aaKnown RBP17.02■□□□□ 0.31
COL4A1-204ENST00000543140 PYROXD1Q8WU10 500 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 WNT8BQ93098 351 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 EURLQ9NYK6 297 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 CDY2AQ9Y6F7 541 aa17.02■□□□□ 0.31
COL4A1-204ENST00000543140 APOL1O14791 398 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 NBPF20Q3BBV1 942 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 WSCD1Q658N2 575 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 ZDHHC17Q8IUH5 632 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 B3GALNT2Q8NCR0 500 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 SOCS4Q8WXH5 440 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 ARHGAP39Q9C0H5 1083 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 DHX35Q9H5Z1 703 aaKnown RBP17.01■□□□□ 0.31
COL4A1-204ENST00000543140 ZFYVE28Q9HCC9 887 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 DCAF8L1A6NGE4 600 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 CYB561D2O14569 222 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 KCNN4O15554 427 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 HOXC8P31273 242 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 RDXP35241 583 aaKnown RBP17.01■□□□□ 0.31
COL4A1-204ENST00000543140 C6orf89Q6UWU4 347 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 SLC26A9Q7LBE3 791 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 MAML1Q92585 1016 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 LPPQ93052 612 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 WDR83Q9BRX9 315 aaKnown RBP17.01■□□□□ 0.31
COL4A1-204ENST00000543140 KIF9Q9HAQ2 790 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 ST3GAL5Q9UNP4 418 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 CLUHO75153 1309 aa17.01■□□□□ 0.31
COL4A1-204ENST00000543140 BRCA2P51587 3418 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 BEST1O76090 585 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 DESP17661 470 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 STIP1P31948 543 aaKnown RBP17■□□□□ 0.31
COL4A1-204ENST00000543140 MLH1P40692 756 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 RABGGTBP53611 331 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 MRPS6P82932 125 aaKnown RBP17■□□□□ 0.31
COL4A1-204ENST00000543140 EFTUD2Q15029 972 aaKnown RBP eCLIP17■□□□□ 0.31
COL4A1-204ENST00000543140 GDF6Q6KF10 455 aaPredicted RBP17■□□□□ 0.31
COL4A1-204ENST00000543140 FBXO36Q8NEA4 188 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 TEKT4Q8WW24 435 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 FAM149B1Q96BN6 582 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 USP29Q9HBJ7 922 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 UBN1Q9NPG3 1134 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 VGLL3A8MV65 326 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 M0QZ92 97 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 NDC80O14777 642 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 DUSP11O75319 330 aaKnown RBP17■□□□□ 0.31
COL4A1-204ENST00000543140 SPAG7O75391 227 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 IGHA2P01877 340 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 RBL1P28749 1068 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 ADIGQ0VDE8 80 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 PKN2Q16513 984 aaKnown RBP17■□□□□ 0.31
COL4A1-204ENST00000543140 FAXCQ5TGI0 409 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 TAF2Q6P1X5 1199 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 C3orf62Q6ZUJ4 267 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 PIGZQ86VD9 579 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 FUKQ8N0W3 1084 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 CCDC185Q8N715 623 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 TNIP3Q96KP6 325 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 GAD1Q99259 594 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 TBCBQ99426 244 aa17■□□□□ 0.31
COL4A1-204ENST00000543140 ELAC2Q9BQ52 826 aaKnown RBP17■□□□□ 0.31
COL4A1-204ENST00000543140 KRT15P19012 456 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 CYP2F1P24903 491 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 MAGEA9P43362 315 aa16.99■□□□□ 0.31
COL4A1-204ENST00000543140 LIMS2Q7Z4I7 341 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms