RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 OR2W6PQ8NHA6 318 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 ROPN1BQ9BZX4 212 aaPredicted RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 ROPN1Q9HAT0 212 aaPredicted RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 NMRK2Q9NPI5 230 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 SDR42E2A6NKP2 422 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 MAP3K13O43283 966 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 ITGB5P18084 799 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 CUL3Q13618 768 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 HSP90AA5PQ58FG0 334 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 PALB2Q86YC2 1186 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 SRPK1Q96SB4 655 aaKnown RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 FICDQ9BVA6 458 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 ADGRE3Q9BY15 652 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 HES2Q9Y543 173 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 HMGCRP04035 888 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 SCNN1BP51168 640 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 NFIL3Q16649 462 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 RASIP1Q5U651 963 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 CCNJLQ8IV13 435 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 REM2Q8IYK8 340 aaPredicted RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 PIP4K2CQ8TBX8 421 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 DUSP9Q99956 384 aaKnown RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 FAM129AQ9BZQ8 928 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 NCAM2O15394 837 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 ADCY6O43306 1168 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 RAMP2O60895 175 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 ZBTB48P10074 688 aaPredicted RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 ELNP15502 786 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 ITGALP20701 1170 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 ALDH18A1P54886 795 aaKnown RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 WASHC5Q12768 1159 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 FAM83EQ2M2I3 478 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 RRM2BQ7LG56 351 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 TFAP2DQ7Z6R9 452 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 STN1Q9H668 368 aaKnown RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 CAPN6Q9Y6Q1 641 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 ADGRA2Q96PE1 1338 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 SOAT2O75908 522 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 GUCY1A3Q02108 690 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 NOMO2Q5JPE7 1267 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 C6orf10Q5SRN2 563 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 CELF6Q96J87 481 aaKnown RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 XPO6Q96QU8 1125 aaKnown RBP14.59□□□□□ -0.07
USP3-204ENST00000540797 HTATIP2Q9BUP3 242 aa14.59□□□□□ -0.07
USP3-204ENST00000540797 CHUKO15111 745 aa14.58□□□□□ -0.07
USP3-204ENST00000540797 CRTAMO95727 393 aa14.58□□□□□ -0.07
USP3-204ENST00000540797 MZF1P28698 734 aaPredicted RBP14.58□□□□□ -0.07
USP3-204ENST00000540797 CRYBB1P53674 252 aaPredicted RBP14.58□□□□□ -0.07
USP3-204ENST00000540797 CAPSQ13938 189 aa14.58□□□□□ -0.07
USP3-204ENST00000540797 NT5DC1Q5TFE4 455 aa14.58□□□□□ -0.07
USP3-204ENST00000540797 LRRC8EQ6NSJ5 796 aa14.58□□□□□ -0.07
USP3-204ENST00000540797 DEFB106AQ8N104 65 aa14.58□□□□□ -0.07
USP3-204ENST00000540797 SGSM3Q96HU1 749 aa14.58□□□□□ -0.07
USP3-204ENST00000540797 APOL2Q9BQE5 337 aa14.58□□□□□ -0.07
USP3-204ENST00000540797 CHN1P15882 459 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 OR1E1P30953 314 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 CD52P31358 61 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 TUBP50607 506 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 HIST2H2ACQ16777 129 aaPredicted RBP14.58□□□□□ -0.08
USP3-204ENST00000540797 SHROOM1Q2M3G4 852 aaPredicted RBP14.58□□□□□ -0.08
USP3-204ENST00000540797 NBPF20Q3BBV1 942 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 SGO1Q5FBB7 561 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 HIST2H2AA3Q6FI13 130 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 RFWD2Q8NHY2 731 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 WWOXQ9NZC7 414 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 BCL9LQ86UU0 1499 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.58□□□□□ -0.08
USP3-204ENST00000540797 LMNAP02545 664 aaKnown RBP14.58□□□□□ -0.08
USP3-204ENST00000540797 E2F4Q16254 413 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 MARC1Q5VT66 337 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 WSCD1Q658N2 575 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 RIBC1Q8N443 379 aaPredicted RBP14.58□□□□□ -0.08
USP3-204ENST00000540797 HELQQ8TDG4 1101 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 CAPNS2Q96L46 248 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 FAM161BQ96MY7 647 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 TBCBQ99426 244 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 RUBCNLQ9H714 662 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 RBM22Q9NW64 420 aaKnown RBP eCLIP14.58□□□□□ -0.086e-10■■■■□ 22.8
USP3-204ENST00000540797 MARCOQ9UEW3 520 aaPredicted RBP14.58□□□□□ -0.08
USP3-204ENST00000540797 ST3GAL5Q9UNP4 418 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.58□□□□□ -0.08
USP3-204ENST00000540797 GTF2BQ00403 316 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 POU4F1Q01851 419 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 SPRYD7Q5W111 196 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 TMEM121Q9BTD3 319 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 LRRC40Q9H9A6 602 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 ATP13A1Q9HD20 1204 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 THEGQ9P2T0 379 aa14.58□□□□□ -0.08
USP3-204ENST00000540797 VPS26AO75436 327 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 VCLP18206 1134 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 DUSP28Q4G0W2 176 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 SPATA21Q7Z572 469 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 REXO1L1PQ8IX06 675 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 FIBCD1Q8N539 461 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 NOA1Q8NC60 698 aaKnown RBP14.57□□□□□ -0.08
USP3-204ENST00000540797 ADAM32Q8TC27 787 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 VCPIP1Q96JH7 1222 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 KCTD10Q9H3F6 313 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 TRIM49D1C9J1S8 452 aa14.57□□□□□ -0.08
USP3-204ENST00000540797 DDHD2O94830 711 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms