RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 FAM227AF5H4B4 570 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 M0R3H8 397 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 CCP110O43303 1012 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 BRAFP15056 766 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 PHKG2P15735 406 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 KLRC1P26715 233 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 MTHFSP49914 203 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 LINC00205P59089 165 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 NPY5RQ15761 445 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 C3orf38Q5JPI3 329 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 TMTC4Q5T4D3 741 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 ZNF517Q6ZMY9 492 aaPredicted RBP4.31□□□□□ -1.72
VPS13A-213ENST00000539950 DCDC5Q6ZRR9 648 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 MRPL10Q7Z7H8 261 aaKnown RBP4.31□□□□□ -1.72
VPS13A-213ENST00000539950 LIX1LQ8IVB5 337 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 CUL5Q93034 780 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 SUCLG2Q96I99 432 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 SIGLEC11Q96RL6 698 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 STK31Q9BXU1 1019 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 SNX15Q9NRS6 342 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 TMEM184CQ9NVA4 438 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 L1RE1Q9UN81 338 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 PAXBP1Q9Y5B6 917 aa4.31□□□□□ -1.72
VPS13A-213ENST00000539950 H3BNC9 293 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 EXOC5O00471 708 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 MARCH6O60337 910 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 CYP19A1P11511 503 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-213ENST00000539950 MCM5P33992 734 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 GATMP50440 423 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 PGDP52209 483 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 RPS16P62249 146 aaKnown RBP4.3□□□□□ -1.72
VPS13A-213ENST00000539950 ZNF91Q05481 1191 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 DEUP1Q05D60 604 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 CNGA2Q16280 664 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 ZNF750Q32MQ0 723 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 C4orf46Q504U0 113 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 DENND2CQ68D51 928 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 RANBP10Q6VN20 620 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 PIP4P1Q86T03 277 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 CHPFQ8IZ52 775 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 METTL25Q8N6Q8 603 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 IGFBPL1Q8WX77 278 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 NMD3Q96D46 503 aaKnown RBP4.3□□□□□ -1.72
VPS13A-213ENST00000539950 HS6ST2Q96MM7 605 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 GAR1Q9NY12 217 aaKnown RBP4.3□□□□□ -1.72
VPS13A-213ENST00000539950 AFF4Q9UHB7 1163 aaKnown RBP4.3□□□□□ -1.72
VPS13A-213ENST00000539950 HDAC9Q9UKV0 1011 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 ASAP1Q9ULH1 1129 aa4.3□□□□□ -1.72
VPS13A-213ENST00000539950 ISM1B1AKI9 464 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 RAB27BO00194 218 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 INSIG1O15503 277 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 TMPRSS11DO60235 418 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 PIAS2O75928 621 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 RNF8O76064 485 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 PARP1P09874 1014 aaKnown RBP4.29□□□□□ -1.72
VPS13A-213ENST00000539950 IL1R1P14778 569 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 ZKSCAN1P17029 563 aaPredicted RBP4.29□□□□□ -1.72
VPS13A-213ENST00000539950 HOXB6P17509 224 aaKnown RBP4.29□□□□□ -1.72
VPS13A-213ENST00000539950 THBS4P35443 961 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 STK3Q13188 491 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 ARHGEF7Q14155 803 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 KCNB1Q14721 858 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 CXorf57Q6NSI4 855 aaKnown RBP4.29□□□□□ -1.72
VPS13A-213ENST00000539950 C11orf44Q8N8P7 122 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 KAZALD1Q96I82 304 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 VCPIP1Q96JH7 1222 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 TRIM36Q9NQ86 728 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 COL20A1Q9P218 1284 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 RIMKLBQ9ULI2 386 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 TPCN1Q9ULQ1 816 aa4.29□□□□□ -1.72
VPS13A-213ENST00000539950 LOC105371045A0A1W2PR82 267 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 MYMKA6NI61 221 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 CLIC1O00299 241 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 FRS3O43559 492 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 TMEM191BP0C7N4 346 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 U2AF1L5P0DN76 240 aaPredicted RBP4.28□□□□□ -1.72
VPS13A-213ENST00000539950 SNHG28P0DPA3 235 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 NTSR1P30989 418 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 YPEL5P62699 121 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 HTRA4P83105 476 aaPredicted RBP4.28□□□□□ -1.72
VPS13A-213ENST00000539950 U2AF1Q01081 240 aaKnown RBP eCLIP4.28□□□□□ -1.72
VPS13A-213ENST00000539950 FMO1Q01740 532 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 CFHR3Q02985 330 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 CFHR1Q03591 330 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 SLC14A1Q13336 389 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 SLC29A2Q14542 456 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 MFSD13AQ14CX5 517 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 ODR4Q5SWX8 454 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 SAMD14Q8IZD0 417 aaPredicted RBP4.28□□□□□ -1.72
VPS13A-213ENST00000539950 EDC3Q96F86 508 aaKnown RBP4.28□□□□□ -1.72
VPS13A-213ENST00000539950 DHX36Q9H2U1 1008 aaKnown RBP4.28□□□□□ -1.72
VPS13A-213ENST00000539950 FOXP1Q9H334 677 aaPredicted RBP4.28□□□□□ -1.72
VPS13A-213ENST00000539950 EBF3Q9H4W6 596 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 MID2Q9UJV3 735 aa4.28□□□□□ -1.72
VPS13A-213ENST00000539950 ZMYM2Q9UBW7 1377 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 TLR2O60603 784 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 SCGB1D2O95969 90 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 TXNP10599 105 aaKnown RBP4.27□□□□□ -1.73
VPS13A-213ENST00000539950 ACVR2AP27037 513 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 CPT1AP50416 773 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms