RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FAM186AA6NE01 2351 aa15.6■□□□□ 0.09
USP28-204ENST00000537642 A0A1W2PQH9 124 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 E2F8A0AVK6 867 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 TBX18O95935 607 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 EGFP01133 1207 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 CCR3P51677 355 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 GRSF1Q12849 480 aaKnown RBP eCLIP15.59■□□□□ 0.09
USP28-204ENST00000537642 NR1H3Q13133 447 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 GOLGA7BQ2TAP0 167 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 GAB4Q2WGN9 574 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 SGO2Q562F6 1265 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 ZC3H14Q6PJT7 736 aaKnown RBP15.59■□□□□ 0.09
USP28-204ENST00000537642 CCDC186Q7Z3E2 898 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 SCD5Q86SK9 330 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 PIGZQ86VD9 579 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 IRF2BP1Q8IU81 584 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 ADGRG2Q8IZP9 1017 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 SYNPOQ8N3V7 929 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 WBP2Q969T9 261 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 CNOT6LQ96LI5 555 aaKnown RBP15.59■□□□□ 0.09
USP28-204ENST00000537642 P2RY13Q9BPV8 354 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 UBXN6Q9BZV1 441 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 NUP62CLQ9H1M0 184 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 CYLDQ9NQC7 956 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 C2orf42Q9NWW7 574 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 TSPAN16Q9UKR8 245 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 PCDHB4Q9Y5E5 795 aa15.59■□□□□ 0.09
USP28-204ENST00000537642 PTPRZ1P23471 2315 aaPredicted RBP15.59■□□□□ 0.09
USP28-204ENST00000537642 RNF225M0QZC1 329 aaPredicted RBP15.58■□□□□ 0.08
USP28-204ENST00000537642 TULP2O00295 520 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 SLC9A3R1O14745 358 aaPredicted RBP15.58■□□□□ 0.08
USP28-204ENST00000537642 CYP17A1P05093 508 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 VDRP11473 427 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 CD19P15391 556 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 CXCL12P48061 93 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 PDE4CQ08493 712 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 DHCR24Q15392 516 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 DPCR1Q3MIW9 517 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 RAB41Q5JT25 222 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 PKN3Q6P5Z2 889 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 TMEM270Q6UE05 265 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 RRAGAQ7L523 313 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 ZBTB44Q8NCP5 570 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 EZH1Q92800 747 aaPredicted RBP15.58■□□□□ 0.08
USP28-204ENST00000537642 CD101Q93033 1021 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 KREMEN1Q96MU8 473 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 KLF16Q9BXK1 252 aaPredicted RBP15.58■□□□□ 0.08
USP28-204ENST00000537642 NACA2Q9H009 215 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 INTS2Q9H0H0 1204 aaKnown RBP15.58■□□□□ 0.08
USP28-204ENST00000537642 SEMA4AQ9H3S1 761 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.58■□□□□ 0.08
USP28-204ENST00000537642 ZSCAN32Q9NX65 697 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 NUDT5Q9UKK9 219 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 PCDHGA2Q9Y5H1 932 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 KIAA1549LQ6ZVL6 1849 aa15.58■□□□□ 0.08
USP28-204ENST00000537642 O00370 1275 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 XPO1O14980 1071 aaKnown RBP15.57■□□□□ 0.08
USP28-204ENST00000537642 MDM4O15151 490 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 PAPSS2O95340 614 aaPredicted RBP15.57■□□□□ 0.08
USP28-204ENST00000537642 PAEPP09466 180 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 IRF1P10914 325 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 RARGP13631 454 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 DRD1P21728 446 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 ATP5C1P36542 298 aaKnown RBP15.57■□□□□ 0.08
USP28-204ENST00000537642 OPRD1P41143 372 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 BCAT1P54687 386 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 GCNT1Q02742 428 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 RHBDF2Q6PJF5 856 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 CREBRFQ8IUR6 639 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 UBA3Q8TBC4 463 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 TFAP2BQ92481 460 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 ZSWIM1Q9BR11 485 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 TBC1D14Q9P2M4 693 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 NAGPAQ9UK23 515 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 KIAA1257Q9ULG3 409 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 SH3BP1Q9Y3L3 701 aa15.57■□□□□ 0.08
USP28-204ENST00000537642 K7ESF4 209 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 GREM1O60565 184 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 LILRB5O75023 590 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 RNF40O75150 1001 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 CALCAP01258 141 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 HOXC13P31276 330 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 PSEN1P49768 467 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 ZNF132P52740 706 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 SLC8A3P57103 927 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 BST2Q10589 180 aaKnown RBP15.56■□□□□ 0.08
USP28-204ENST00000537642 PPP2R5DQ14738 602 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 PKDCCQ504Y2 493 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 KLHDC10Q6PID8 442 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 LCLAT1Q6UWP7 414 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 BBS7Q8IWZ6 715 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 ZNF276Q8N554 614 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 RBBP8NLQ8NC74 664 aaPredicted RBP15.56■□□□□ 0.08
USP28-204ENST00000537642 GPT2Q8TD30 523 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 EXOC4Q96A65 974 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 OTUB2Q96DC9 234 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 GBP4Q96PP9 640 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 FAM126AQ9BYI3 521 aaPredicted RBP15.56■□□□□ 0.08
USP28-204ENST00000537642 CLIC5Q9NZA1 410 aa15.56■□□□□ 0.08
USP28-204ENST00000537642 HESX1Q9UBX0 185 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms