RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SLC2A14Q8TDB8 520 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 TMC2Q8TDI7 906 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 RLN3Q8WXF3 142 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 DDX1Q92499 740 aaKnown RBP8.96□□□□□ -0.98
USP28-203ENST00000537490 SMARCD1Q96GM5 515 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 LSM14BQ9BX40 385 aaKnown RBP8.96□□□□□ -0.98
USP28-203ENST00000537490 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.96□□□□□ -0.98
USP28-203ENST00000537490 ARHGEF4Q9NR80 690 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 KRT82Q9NSB4 513 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 COMMD8Q9NX08 183 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 TBC1D14Q9P2M4 693 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 HPSEQ9Y251 543 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 SH3BP1Q9Y3L3 701 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 ATP8B3O60423 1300 aa8.96□□□□□ -0.98
USP28-203ENST00000537490 RALGAPA1Q6GYQ0 2036 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 C4orf47A7E2U8 309 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 PATE3B3GLJ2 98 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 TRIM24O15164 1050 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 GREM1O60565 184 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 ADAM23O75077 832 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 KRT37O76014 449 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 TBX18O95935 607 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 ASS1P00966 412 aaKnown RBP8.95□□□□□ -0.98
USP28-203ENST00000537490 HLA-DRAP01903 254 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 PRR29P0C7W0 189 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 IRF1P10914 325 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 ADORA2BP29275 332 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 TNFRSF4P43489 277 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 ASPAP45381 313 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 TUBP50607 506 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 GAD2Q05329 585 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 RNF43Q68DV7 783 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 GPRIN1Q7Z2K8 1008 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 UNC93AQ86WB7 457 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 TMEM25Q86YD3 366 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 ETFBKMTQ8IXQ9 262 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 PIP4P2Q8N4L2 257 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 FRMD1Q8N878 549 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 OLIG1Q8TAK6 271 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 TAF4BQ92750 862 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 OTUB2Q96DC9 234 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 TWNKQ96RR1 684 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 EDEM2Q9BV94 578 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 KLF16Q9BXK1 252 aaPredicted RBP8.95□□□□□ -0.98
USP28-203ENST00000537490 APOBEC3GQ9HC16 384 aaKnown RBP8.95□□□□□ -0.98
USP28-203ENST00000537490 CSNK1G1Q9HCP0 422 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 SPHK2Q9NRA0 654 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 FAM49BQ9NUQ9 324 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 OSER1Q9NX31 292 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 USP25Q9UHP3 1055 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 HCN2Q9UL51 889 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 TRAF3IP3Q9Y228 551 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 ZDHHC9Q9Y397 364 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 CNOT1A5YKK6 2376 aaKnown RBP8.95□□□□□ -0.98
USP28-203ENST00000537490 PTPRDP23468 1912 aa8.95□□□□□ -0.98
USP28-203ENST00000537490 EML5Q05BV3 1969 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 TBC1D3BA6NDS4 549 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 HHLA1C9JL84 531 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 IKBKBO14920 756 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 HOXC11O43248 304 aaPredicted RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 CALUO43852 315 aaPredicted RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 TLR5O60602 858 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 TULP3O75386 442 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 ALDH1A2O94788 518 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 KCNK5O95279 499 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 P4HA1P13674 534 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 PMLP29590 882 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 P2RY2P41231 377 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 PIK3CAP42336 1068 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 SYKP43405 635 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 GCLMP48507 274 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 DHPSP49366 369 aaPredicted RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 VAMP7P51809 220 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 NDUFA8P51970 172 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 IRX4P78413 519 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 PPP3CAQ08209 521 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 ANO4Q32M45 955 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 HSF5Q4G112 596 aaPredicted RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 EOGTQ5NDL2 527 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 BTBD8Q5XKL5 378 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 CLEC20AQ6ZU45 233 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 HTR3DQ70Z44 454 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 C11orf74Q86VG3 221 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 ABCA7Q8IZY2 2146 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 TAS1R2Q8TE23 839 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 WHAMMQ8TF30 809 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 CYFIP2Q96F07 1278 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 HNRNPABQ99729 332 aaKnown RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 DUSP9Q99956 384 aaKnown RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 NACA2Q9H009 215 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 FBXO44Q9H4M3 255 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 TLR8Q9NR97 1041 aaKnown RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 DEC1Q9P2X7 70 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 MBD1Q9UIS9 605 aaPredicted RBP8.94□□□□□ -0.98
USP28-203ENST00000537490 MAPK8IP1Q9UQF2 711 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 FRMD4BQ9Y2L6 1034 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 SPAG17Q6Q759 2223 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 ACACBO00763 2458 aa8.94□□□□□ -0.98
USP28-203ENST00000537490 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms