RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PENKP01210 267 aaPredicted RBP14.77□□□□□ -0.04
USP48-213ENST00000529637 EDN1P05305 212 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 ITGA2BP08514 1039 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 DHRS4L1P0CG22 281 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 PRPF39Q86UA1 669 aaKnown RBP14.77□□□□□ -0.04
USP48-213ENST00000529637 LRRC71Q8N4P6 559 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 HIPK4Q8NE63 616 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 PRPF31Q8WWY3 499 aaKnown RBP14.77□□□□□ -0.04
USP48-213ENST00000529637 PLEKHG4BQ96PX9 1271 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 TMEM165Q9HC07 324 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 PCDHGB4Q9UN71 923 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 PCDHGB5Q9Y5G0 923 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 KIAA1217Q5T5P2 1943 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 A0A0B4J269 797 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 CCDC195A0A1B0GUA6 201 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 PRR5-ARHGAP8B1AHC4 643 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 ARHGAP8P85298 464 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 ORC1Q13415 861 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 CAPSQ13938 189 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 TRMT5Q32P41 509 aaKnown RBP14.77□□□□□ -0.04
USP48-213ENST00000529637 PLEKHA7Q6IQ23 1121 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 ACAD11Q709F0 780 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 IGDCC3Q8IVU1 814 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 ARID3BQ8IVW6 561 aaPredicted RBP14.77□□□□□ -0.04
USP48-213ENST00000529637 ARHGAP24Q8N264 748 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 EFCAB3Q8N7B9 438 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 DHRS4Q9BTZ2 278 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 SMYD3Q9H7B4 428 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 NRBP2Q9NSY0 501 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 GINM1Q9NU53 330 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 DDX18Q9NVP1 670 aaKnown RBP14.77□□□□□ -0.04
USP48-213ENST00000529637 TMCO1Q9UM00 188 aa14.77□□□□□ -0.04
USP48-213ENST00000529637 NFASCO94856 1347 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 CIB2O75838 187 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 FAM155BO75949 473 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 TMEM191BP0C7N4 346 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 IMPDH2P12268 514 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 PEX2P28328 305 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 STAT5BP51692 787 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 SLC25A3Q00325 362 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 C1QBPQ07021 282 aaKnown RBP14.77□□□□□ -0.05
USP48-213ENST00000529637 FAAP100Q0VG06 881 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 WDR78Q5VTH9 848 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 FBXL19Q6PCT2 694 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 RNF149Q8NC42 400 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 TMEM35BQ8NCS4 154 aa14.77□□□□□ -0.05
USP48-213ENST00000529637 CYB561D2O14569 222 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 TGDSO95455 350 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 MT-ND3P03897 115 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 ABCD1P33897 745 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 PTP4A2Q12974 167 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 MED21Q13503 144 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 KCNT1Q5JUK3 1230 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 DPY19L2Q6NUT2 758 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 TRIM50Q86XT4 487 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 PHF13Q86YI8 300 aaPredicted RBP14.76□□□□□ -0.05
USP48-213ENST00000529637 RCOR2Q8IZ40 523 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 STKLD1Q8NE28 680 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 REPS2Q8NFH8 660 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 SLITRK1Q96PX8 696 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 CAMKK2Q96RR4 588 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 C20orf27Q9GZN8 174 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 DHX33Q9H6R0 707 aaKnown RBP14.76□□□□□ -0.05
USP48-213ENST00000529637 CISHQ9NSE2 258 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 HOXC10Q9NYD6 342 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 A0A088AWK7 358 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 PFDN1O60925 122 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 BBS9Q3SYG4 887 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 RALGPS1Q5JS13 557 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 CEP128Q6ZU80 1094 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 SMC1BQ8NDV3 1235 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 NLRP4Q96MN2 994 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 OLFM3Q96PB7 478 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 EBF4Q9BQW3 602 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 ACSS3Q9H6R3 686 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 CNTN3Q9P232 1028 aa14.76□□□□□ -0.05
USP48-213ENST00000529637 TXNDC9O14530 226 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 VCLP18206 1134 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 TPP2P29144 1249 aaPredicted RBP14.75□□□□□ -0.05
USP48-213ENST00000529637 ASPHQ12797 758 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 HNRNPDQ14103 355 aaKnown RBP14.75□□□□□ -0.05
USP48-213ENST00000529637 OASLQ15646 514 aaKnown RBP14.75□□□□□ -0.05
USP48-213ENST00000529637 FAM172AQ8WUF8 416 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 CPT1BQ92523 772 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 STRIP2Q9ULQ0 834 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 SPDYE16A6NNV3 312 aaPredicted RBP14.75□□□□□ -0.05
USP48-213ENST00000529637 INO80B-WBP1J3KQ70 363 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 ATP2A1O14983 1001 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 STAM2O75886 525 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 CALB1P05937 261 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 UBA1P22314 1058 aaKnown RBP14.75□□□□□ -0.05
USP48-213ENST00000529637 MMP8P22894 467 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 PSMA2P25787 234 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 ZNF699Q32M78 642 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 SPOCD1Q6ZMY3 1216 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 SH2D5Q6ZV89 423 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 LENG1Q96BZ8 264 aaPredicted RBP14.75□□□□□ -0.05
USP48-213ENST00000529637 VCPIP1Q96JH7 1222 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 ACAP3Q96P50 834 aa14.75□□□□□ -0.05
USP48-213ENST00000529637 PHF12Q96QT6 1004 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms