RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 BMT2Q1RMZ1 405 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 BBS7Q8IWZ6 715 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 DUSP9Q99956 384 aaKnown RBP25■■□□□ 1.59
CPSF1-202ENST00000527827 SDCBP2Q9H190 292 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 GMIPQ9P107 970 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 RALYQ9UKM9 306 aaKnown RBP25■■□□□ 1.59
CPSF1-202ENST00000527827 HCN2Q9UL51 889 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 SH3BP1Q9Y3L3 701 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 ADAMTS9Q9P2N4 1935 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 MYH10P35580 1976 aa25■■□□□ 1.59
CPSF1-202ENST00000527827 FAM92AA1XBS5 289 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 TBC1D3BA6NDS4 549 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 ATP8B3O60423 1300 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 CUTAO60888 179 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 PHACTR2O75167 634 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 TULP3O75386 442 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 ZDHHC11BP0C7U3 371 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 TUBP50607 506 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 LMAN2Q12907 356 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 SPDYCQ5MJ68 293 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 TMEM25Q86YD3 366 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 PGBD3Q8N328 593 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 DEFB124Q8NES8 71 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 ELMO3Q96BJ8 720 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 MED10Q9BTT4 135 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 BLZF1Q9H2G9 400 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 SLC39A2Q9NP94 309 aa24.99■■□□□ 1.59
CPSF1-202ENST00000527827 DMAP1Q9NPF5 467 aaPredicted RBP24.99■■□□□ 1.59
CPSF1-202ENST00000527827 ATXN2Q99700 1313 aaKnown RBP24.98■■□□□ 1.59
CPSF1-202ENST00000527827 PGFP49763 221 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 BYSLQ13895 437 aaKnown RBP24.98■■□□□ 1.59
CPSF1-202ENST00000527827 ZNF699Q32M78 642 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 PEAR1Q5VY43 1037 aaPredicted RBP24.98■■□□□ 1.59
CPSF1-202ENST00000527827 LYSMD4Q5XG99 296 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 BTBD8Q5XKL5 378 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 ZNF513Q8N8E2 541 aaPredicted RBP24.98■■□□□ 1.59
CPSF1-202ENST00000527827 ZMIZ2Q8NF64 920 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 KCNV2Q8TDN2 545 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 NUSAP1Q9BXS6 441 aaKnown RBP24.98■■□□□ 1.59
CPSF1-202ENST00000527827 SPHK2Q9NRA0 654 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 COMMD8Q9NX08 183 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 CGNQ9P2M7 1197 aaKnown RBP24.98■■□□□ 1.59
CPSF1-202ENST00000527827 DEC1Q9P2X7 70 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 PILRBQ9UKJ0 227 aa24.98■■□□□ 1.59
CPSF1-202ENST00000527827 FAM208BQ5VWN6 2430 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 CACNA1EQ15878 2313 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 TRIM24O15164 1050 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 EXOC3O60645 756 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 YEATS4O95619 227 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 ENGP17813 658 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 ITPKAP23677 461 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 BIRC3Q13489 604 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 KNOP1Q1ED39 458 aaKnown RBP24.97■■□□□ 1.59
CPSF1-202ENST00000527827 ZNF667Q5HYK9 610 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 SLC23A3Q6PIS1 610 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 SCARA5Q6ZMJ2 495 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 FUKQ8N0W3 1084 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 TERB1Q8NA31 727 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 KDF1Q8NAX2 398 aaPredicted RBP24.97■■□□□ 1.59
CPSF1-202ENST00000527827 SMARCD1Q96GM5 515 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 TNIP3Q96KP6 325 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 ZNF396Q96N95 335 aaPredicted RBP24.97■■□□□ 1.59
CPSF1-202ENST00000527827 ADAM33Q9BZ11 813 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 MAGEF1Q9HAY2 307 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 ZMIZ1Q9ULJ6 1067 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 AKAP13Q12802 2813 aa24.97■■□□□ 1.59
CPSF1-202ENST00000527827 LRRIQ3A6PVS8 624 aaPredicted RBP24.96■■□□□ 1.59
CPSF1-202ENST00000527827 POLR2DO15514 142 aaKnown RBP24.96■■□□□ 1.59
CPSF1-202ENST00000527827 ZZEF1O43149 2961 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 AP1G2O75843 785 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 VNN1O95497 513 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 C4BPAP04003 597 aaKnown RBP24.96■■□□□ 1.59
CPSF1-202ENST00000527827 IRF1P10914 325 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 GABRG2P18507 467 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 MAPK8P45983 427 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 CLDN10P78369 228 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 ANO4Q32M45 955 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 C10orf76Q5T2E6 689 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 ACOT1Q86TX2 421 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 MIB1Q86YT6 1006 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 PARD3BQ8TEW8 1205 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 SMOQ99835 787 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 SCNM1Q9BWG6 230 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 KRT82Q9NSB4 513 aa24.96■■□□□ 1.59
CPSF1-202ENST00000527827 GREM1O60565 184 aa24.95■■□□□ 1.58
CPSF1-202ENST00000527827 BEST1O76090 585 aa24.95■■□□□ 1.58
CPSF1-202ENST00000527827 DPP6P42658 865 aa24.95■■□□□ 1.58
CPSF1-202ENST00000527827 NCOA4Q13772 614 aa24.95■■□□□ 1.58
CPSF1-202ENST00000527827 PREPLQ4J6C6 727 aaPredicted RBP24.95■■□□□ 1.58
CPSF1-202ENST00000527827 TRMT11Q7Z4G4 463 aaKnown RBP24.95■■□□□ 1.58
CPSF1-202ENST00000527827 FSCN3Q9NQT6 498 aa24.95■■□□□ 1.58
CPSF1-202ENST00000527827 PCDH15Q96QU1 1955 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 PVALEFA0A1B0GWK0 134 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 CCDC130P13994 396 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 HOXB2P14652 356 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 WASP42768 502 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 AP3M2P53677 418 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 CUL4BQ13620 913 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 GATA6Q92908 595 aa24.94■■□□□ 1.58
CPSF1-202ENST00000527827 KLF16Q9BXK1 252 aaPredicted RBP24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms