RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 GMIPQ9P107 970 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 KLK13Q9UKR3 277 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 IGSF10Q6WRI0 2623 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 SRRM3A6NNA2 597 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-201ENST00000526271 EIF3DO15371 548 aaKnown RBP eCLIP15.16■□□□□ 0.02
CPSF1-201ENST00000526271 HOXC11O43248 304 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-201ENST00000526271 STAU1O95793 577 aaKnown RBP15.16■□□□□ 0.02
CPSF1-201ENST00000526271 APODP05090 189 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 GRIA2P42262 883 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 WASP42768 502 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 MAPK8P45983 427 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 CYP2J2P51589 502 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 SLC5A3P53794 718 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 ORC1Q13415 861 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 TDRD10Q5VZ19 366 aaKnown RBP15.16■□□□□ 0.02
CPSF1-201ENST00000526271 EGFLAMQ63HQ2 1017 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 SLC23A3Q6PIS1 610 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 GPRIN1Q7Z2K8 1008 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 FAM35AQ86V20 835 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 C11orf74Q86VG3 221 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 SYT12Q8IV01 421 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 CCDC65Q8IXS2 484 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 NUP93Q8N1F7 819 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 WHAMMQ8TF30 809 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 EXOC4Q96A65 974 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 SMOQ99835 787 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 ELOVL4Q9GZR5 314 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 SLC6A17Q9H1V8 727 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 TNMDQ9H2S6 317 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 APC2O95996 2303 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 NUMA1Q14980 2115 aa15.16■□□□□ 0.02
CPSF1-201ENST00000526271 E2F8A0AVK6 867 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 PRRT4C9JH25 899 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 TBX18O95935 607 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 FAM163BP0C2L3 166 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 YWHAQP27348 245 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 TNFRSF4P43489 277 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 PPP3CCP48454 512 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 PDE6CP51160 858 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 SURF1Q15526 300 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 BMT2Q1RMZ1 405 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 FAM26FQ5R3K3 315 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 C1orf220Q5T0J3 134 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 TOGARAM2Q6ZUX3 1019 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 LPCAT2Q7L5N7 544 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 FBXO32Q969P5 355 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 DUSP9Q99956 384 aaKnown RBP15.15■□□□□ 0.02
CPSF1-201ENST00000526271 SNX25Q9H3E2 840 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 VRTNQ9H8Y1 702 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 CALCOCO1Q9P1Z2 691 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 NXF1Q9UBU9 619 aaKnown RBP15.15■□□□□ 0.02
CPSF1-201ENST00000526271 PTPRBP23467 1997 aa15.15■□□□□ 0.02
CPSF1-201ENST00000526271 IGHV1OR15-9A0A0B4J2B8 117 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 A8MXQ7 604 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 HHLA1C9JL84 531 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 GJB3O75712 270 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 ADH1CP00326 375 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 C4BPAP04003 597 aaKnown RBP15.14■□□□□ 0.01
CPSF1-201ENST00000526271 CD59P13987 128 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 CCDC130P13994 396 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 TNNI1P19237 187 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 NDUFV2P19404 249 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 TXLNAP40222 546 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 DLG4P78352 724 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 CLDN10P78369 228 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 HSF5Q4G112 596 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-201ENST00000526271 EOGTQ5NDL2 527 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 C12orf56Q8IXR9 622 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 TERB1Q8NA31 727 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 DHX58Q96C10 678 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 SLITRK1Q96PX8 696 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 TWNKQ96RR1 684 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 C7orf25Q9BPX7 421 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 BLZF1Q9H2G9 400 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 SPHK2Q9NRA0 654 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 FOXD4L1Q9NU39 408 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 TFIP11Q9UBB9 837 aaKnown RBP15.14■□□□□ 0.01
CPSF1-201ENST00000526271 CKAP5Q14008 2032 aa15.14■□□□□ 0.01
CPSF1-201ENST00000526271 LRRIQ3A6PVS8 624 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-201ENST00000526271 SLC9A3R1O14745 358 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-201ENST00000526271 CISD3P0C7P0 127 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 IRF1P10914 325 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 ASIC1P78348 528 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 GAD2Q05329 585 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 HECTD3Q5T447 861 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 LYSMD4Q5XG99 296 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 SCARA5Q6ZMJ2 495 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 GRAMD1CQ8IYS0 662 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 ZNF513Q8N8E2 541 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-201ENST00000526271 XXYLT1Q8NBI6 393 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 CCDC26Q8TAB7 109 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 PARD3BQ8TEW8 1205 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 OVCA2Q8WZ82 227 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 CAMK1GQ96NX5 476 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 KLF16Q9BXK1 252 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-201ENST00000526271 NMUR1Q9HB89 426 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 KIAA1586Q9HCI6 787 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 DMAC2Q9NW81 257 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 STARD13Q9Y3M8 1113 aa15.13■□□□□ 0.01
CPSF1-201ENST00000526271 RAD54BQ9Y620 910 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms