RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 GRAMD4Q6IC98 578 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 SDE2Q6IQ49 451 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 DBX2Q6ZNG2 339 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 ZNF720Q7Z2F6 126 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 TMEM25Q86YD3 366 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 BBS7Q8IWZ6 715 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 GALNT15Q8N3T1 639 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 ZCCHC9Q8N567 271 aaKnown RBP11.65□□□□□ -0.54
DDX41-216ENST00000513562 SLC39A7Q92504 469 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 RAD54LQ92698 747 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 SAAL1Q96ER3 474 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 CALML4Q96GE6 196 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 CDC6Q99741 560 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 STRA6Q9BX79 667 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 SLC6A17Q9H1V8 727 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 GAREM1Q9H706 876 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 TM7SF3Q9NS93 570 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 FNDC3AQ9Y2H6 1198 aaKnown RBP11.65□□□□□ -0.54
DDX41-216ENST00000513562 PCDHGB2Q9Y5G2 931 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 RAD54BQ9Y620 910 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 ANK1P16157 1881 aa11.65□□□□□ -0.54
DDX41-216ENST00000513562 HELZP42694 1942 aaKnown RBP11.64□□□□□ -0.55
DDX41-216ENST00000513562 ATXN7O15265 892 aaPredicted RBP11.64□□□□□ -0.55
DDX41-216ENST00000513562 FLRT2O43155 660 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 CILPO75339 1184 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 WARSP23381 471 aaKnown RBP11.64□□□□□ -0.55
DDX41-216ENST00000513562 CD6P30203 668 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 MATKP42679 507 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 CACNA2D1P54289 1103 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 BNC1Q01954 994 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 KCNA1Q09470 495 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 MYO1EQ12965 1108 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 ANO4Q32M45 955 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 IL27RAQ6UWB1 636 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 METTL3Q86U44 580 aaKnown RBP11.64□□□□□ -0.55
DDX41-216ENST00000513562 SFR1Q86XK3 245 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 PDZD8Q8NEN9 1154 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 OVCA2Q8WZ82 227 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 ERLEC1Q96DZ1 483 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 TOE1Q96GM8 510 aaKnown RBP11.64□□□□□ -0.55
DDX41-216ENST00000513562 PRDM16Q9HAZ2 1276 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 TMEM30AQ9NV96 361 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 DNAJC17Q9NVM6 304 aaKnown RBP11.64□□□□□ -0.55
DDX41-216ENST00000513562 SH3BP1Q9Y3L3 701 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 MAST4O15021 2626 aa11.64□□□□□ -0.55
DDX41-216ENST00000513562 ZNF638Q14966 1978 aaKnown RBP11.63□□□□□ -0.55
DDX41-216ENST00000513562 PLXNB3Q9ULL4 1909 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 MEI4A8MW99 385 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 PRRT4C9JH25 899 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 E9PAM4 449 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 TULP1O00294 542 aaPredicted RBP11.63□□□□□ -0.55
DDX41-216ENST00000513562 GFRA2O00451 464 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 CACNG3O60359 315 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 LDHAP00338 332 aaKnown RBP11.63□□□□□ -0.55
DDX41-216ENST00000513562 PDGFRBP09619 1106 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 TMEM191BP0C7N4 346 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 NCAM1P13591 858 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 PLA2G2AP14555 144 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 GARTP22102 1010 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 UBA7P41226 1012 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 TUBP50607 506 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 SMAD1Q15797 465 aaKnown RBP11.63□□□□□ -0.55
DDX41-216ENST00000513562 HLA-BQ31612 363 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 MDH1BQ5I0G3 518 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 HECTD3Q5T447 861 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 SNX30Q5VWJ9 437 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 KIAA1324Q6UXG2 1013 aaKnown RBP11.63□□□□□ -0.55
DDX41-216ENST00000513562 PDCD7Q8N8D1 485 aaKnown RBP11.63□□□□□ -0.55
DDX41-216ENST00000513562 CADM4Q8NFZ8 388 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 RHBDD1Q8TEB9 315 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 HPDLQ96IR7 371 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 ELOVL4Q9GZR5 314 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 PDE11AQ9HCR9 933 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 WSB2Q9NYS7 404 aaPredicted RBP11.63□□□□□ -0.55
DDX41-216ENST00000513562 USP36Q9P275 1121 aaKnown RBP11.63□□□□□ -0.55
DDX41-216ENST00000513562 EXOC7Q9UPT5 735 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 NME7Q9Y5B8 376 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 CFAP46Q8IYW2 2715 aa11.63□□□□□ -0.55
DDX41-216ENST00000513562 TENM4Q6N022 2769 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 PTPRJQ12913 1337 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 ANAPC1Q9H1A4 1944 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 ADAMTS9Q9P2N4 1935 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 FAM149AA5PLN7 773 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 BCAT2O15382 392 aaPredicted RBP11.62□□□□□ -0.55
DDX41-216ENST00000513562 YWHAQP27348 245 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 DDIT3P35638 169 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 IFRD2Q12894 506 aaPredicted RBP11.62□□□□□ -0.55
DDX41-216ENST00000513562 PTPRNQ16849 979 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 L1TD1Q5T7N2 865 aaKnown RBP11.62□□□□□ -0.55
DDX41-216ENST00000513562 HS2ST1Q7LGA3 356 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 NUP93Q8N1F7 819 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 KRI1Q8N9T8 703 aaKnown RBP11.62□□□□□ -0.55
DDX41-216ENST00000513562 LSM14AQ8ND56 463 aaKnown RBP11.62□□□□□ -0.55
DDX41-216ENST00000513562 C1orf216Q8TAB5 229 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 PIP4K2CQ8TBX8 421 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 SCFD1Q8WVM8 642 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 LARP4BQ92615 738 aaKnown RBP11.62□□□□□ -0.55
DDX41-216ENST00000513562 FBXO32Q969P5 355 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 WBP2Q969T9 261 aa11.62□□□□□ -0.55
DDX41-216ENST00000513562 ANKRD36BP1Q96IX9 119 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms