RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RXFP1Q9HBX9 757 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 AVENQ9NQS1 362 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 LCMT1Q9UIC8 334 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 PLCL2Q9UPR0 1127 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 MROH7Q68CQ1 1323 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 WDR19Q8NEZ3 1342 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 LIN7AO14910 233 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 KCNN4O15554 427 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 MTSS1O43312 755 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 HSMCR30P0CW71 290 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 FOSL1P15407 271 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 CCNHP51946 323 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 NR1H2P55055 460 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 MTMR1Q13613 665 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 MEI1Q5TIA1 1274 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 FAAH2Q6GMR7 532 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 NEK5Q6P3R8 708 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM20AQ96MK3 541 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 TMEM117Q9H0C3 514 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ALDH8A1Q9H2A2 487 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 RERGLQ9H628 205 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 MOV10Q9HCE1 1003 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 KIAA1586Q9HCI6 787 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ABCB10Q9NRK6 738 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 EHD3Q9NZN3 535 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 DMGDHQ9UI17 866 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 DOLKQ9UPQ8 538 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 DUSP10Q9Y6W6 482 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 V9GYQ6 96 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 PTPRUQ92729 1446 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 A0A1W2PQ72 361 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CCDC166P0CW27 439 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 THRAP10827 490 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 RAG1P15918 1043 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 STAT5AP42229 794 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 STAT5BP51692 787 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF200P98182 395 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 PTK7Q13308 1070 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 COL9A3Q14050 684 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 QPRTQ15274 297 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 NFIL3Q16649 462 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 MTHFD1LQ6UB35 978 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 MCPH1Q8NEM0 835 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 AGBL3Q8NEM8 1001 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CPA5Q8WXQ8 436 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 RBBP8Q99708 897 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM49AQ9H0Q0 323 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 FBXL21Q9UKT6 434 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 SLC12A4Q9UP95 1085 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CDYLQ9Y232 598 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CLOCKO15516 846 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 PEX1O43933 1283 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 NOS1APO75052 506 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 CCNKO75909 580 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CYBBP04839 570 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 FCGR1AP12314 374 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 GALK1P51570 392 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 ITGA8P53708 1063 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 SRP54P61011 504 aaKnown RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 CHRNB3Q05901 458 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 NAB2Q15742 525 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 MAPK6Q16659 721 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CHADLQ6NUI6 762 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 SYDE1Q6ZW31 735 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 POLNQ7Z5Q5 900 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CDKL3Q8IVW4 592 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 KCTD17Q8N5Z5 321 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 NSUN6Q8TEA1 469 aaKnown RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 RASSF5Q8WWW0 418 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 ACAD9Q9H845 621 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 EFCAB1Q9HAE3 211 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 TRNAU1APQ9NX07 287 aaKnown RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 GIN1Q9NXP7 522 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 ERAP1Q9NZ08 941 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 PHTF1Q9UMS5 762 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 ALG6Q9Y672 507 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 EFCAB10A6NFE3 127 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM196BA6NMK8 535 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 E5RI56 91 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 FKTNO75072 461 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 RTN3O95197 1032 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 GH2P01242 217 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 PLEKP08567 350 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 PHKA2P46019 1235 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 MCL1Q07820 350 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 MXD4Q14582 209 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 TSGA10IPQ3SY00 556 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 TWF2Q6IBS0 349 aaKnown RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 BNC2Q6ZN30 1099 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 LRRC8DQ7L1W4 858 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 COL23A1Q86Y22 540 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 CASKIN2Q8WXE0 1202 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 E2F7Q96AV8 911 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CENPTQ96BT3 561 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 IFT43Q96FT9 208 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM129BQ96TA1 746 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 SH2D3AQ9BRG2 576 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 FOXP3Q9BZS1 431 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 DCP1AQ9NPI6 582 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 GGA3Q9NZ52 723 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms