RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MYOM2P54296 1465 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 SERPINB5P36952 375 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 GEMP55040 296 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 VBP1P61758 197 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 PRKCQQ04759 706 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF568Q3ZCX4 644 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ATG14Q6ZNE5 492 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 PRR23CQ6ZRP0 262 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 REXO1L1PQ8IX06 675 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 TTC30BQ8N4P2 665 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 OXNAD1Q96HP4 312 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 PPP1R36Q96LQ0 422 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 LBHD1Q9BQE6 289 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ZSWIM1Q9BR11 485 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 FAM213AQ9BRX8 229 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 HPS4Q9NQG7 708 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 CHKBQ9Y259 395 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 IRGMA1A4Y4 181 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 MAGEB16A2A368 324 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 DENND3A2RUS2 1198 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 PDGFRAP16234 1089 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 COMTP21964 271 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 HSF2Q03933 536 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 MSLNQ13421 630 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 TOB2Q14106 344 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 SCAIQ8N9R8 606 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF669Q96BR6 464 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ATXN7L3BQ96GX2 97 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 IRX2Q9BZI1 471 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 GALNT8Q9NY28 637 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 SLC39A10Q9ULF5 831 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 UTYO14607 1347 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 SDR42E2A6NKP2 422 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ZBTB5O15062 677 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 RARBP10826 455 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 AKR1B1P15121 316 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 FXR1P51114 621 aaKnown RBP eCLIP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 CDK16Q00536 496 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 PDK3Q15120 406 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 RNF43Q68DV7 783 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF746Q6NUN9 644 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 STRA8Q7Z7C7 330 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 RTKN2Q8IZC4 609 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 GANCQ8TET4 914 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 PPP1R10Q96QC0 940 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 GRIP2Q9C0E4 1043 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 SHOC2Q9UQ13 582 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 TRAPPC3O43617 180 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 SUPT7LO94864 414 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ALDH5A1P51649 535 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PHKG1Q16816 387 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 SGMS1Q86VZ5 419 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ARL10Q8N8L6 244 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 TRIM9Q9C026 710 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 TRPM5Q9NZQ8 1165 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 TNRQ92752 1358 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 FEN1P39748 380 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PSMC5P62195 406 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 EIF5AP63241 154 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ALDH6A1Q02252 535 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 EPHA7Q15375 998 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 SHC4Q6S5L8 630 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PLET1Q6UQ28 207 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ELMOD1Q8N336 334 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 TRPV1Q8NER1 839 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 SNIP1Q8TAD8 396 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ZHX1-C8orf76Q96EF9 292 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 TEKT5Q96M29 485 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PNKPQ96T60 521 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PAGR1Q9BTK6 254 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ROGDIQ9GZN7 287 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 TJP2Q9UDY2 1190 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PRDM4Q9UKN5 801 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 AAR2Q9Y312 384 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 NDUFAF1Q9Y375 327 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 FMO5P49326 533 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF394Q53GI3 561 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 IZUMO1Q8IYV9 350 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 LEMD2Q8NC56 503 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 FAM172AQ8WUF8 416 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 RBAKQ9NYW8 714 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PCDHGA3Q9Y5H0 932 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 CD109Q6YHK3 1445 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 UGGT2Q9NYU1 1516 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 VPS26AO75436 327 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 VAV1P15498 845 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 RASA1P20936 1047 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 EIF2S3P41091 472 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 COPZ1P61923 177 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 TNK2Q07912 1038 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PARP6Q2NL67 630 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 MROH9Q5TGP6 573 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 STK32CQ86UX6 486 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 UNC5CLQ8IV45 518 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 CD302Q8IX05 232 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 EXD1Q8NHP7 514 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF671Q8TAW3 534 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ITFG2Q969R8 447 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 PTCD3Q96EY7 689 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms