RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SNUPNO95149 360 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC4A1P02730 911 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 STAG3L1P0CL83 205 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 PDPK2PQ6A1A2 396 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 PLEKHA7Q6IQ23 1121 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 NPNTQ6UXI9 565 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 CCNJLQ8IV13 435 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 DEFB107AQ8IZN7 70 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 PPP2R3CQ969Q6 453 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 ATP6V1E2Q96A05 226 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 CCDC138Q96M89 665 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 PORCNQ9H237 461 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 IL1RAPL1Q9NZN1 696 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 RPL26L1Q9UNX3 145 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 E9PBE3 544 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 GNGT2O14610 69 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 KLHL41O60662 606 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 TGM2P21980 687 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 RBL1P28749 1068 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 PTGER2P43116 358 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC1A6P48664 564 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 GSCP56915 257 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 BBS12Q6ZW61 710 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 SH3BP5LQ7L8J4 393 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 KDELC2Q7Z4H8 507 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 USP33Q8TEY7 942 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 PLEKHA5Q9HAU0 1116 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 ARHGEF3Q9NR81 526 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 MYH8P13535 1937 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 A0A0B4J269 797 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 DFFAO00273 331 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 MAGEB2O15479 319 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 DNAJC6O75061 913 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 MICAL2O94851 1124 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 THRAP10827 490 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 CPA3P15088 417 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 CYP2F1P24903 491 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 FOXN2P32314 431 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 ACADSBP45954 432 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 BTKQ06187 659 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 TWF2Q6IBS0 349 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 MON1BQ7L1V2 547 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 CLNKQ7Z7G1 428 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 SETD3Q86TU7 594 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 DAW1Q8N136 415 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 STKLD1Q8NE28 680 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 APPL2Q8NEU8 664 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 RFWD2Q8NHY2 731 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 EPAS1Q99814 870 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 MMADHCQ9H3L0 296 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 ST6GALNAC4Q9H4F1 302 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 CYP3A43Q9HB55 503 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 ARL8BQ9NVJ2 186 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 SPATA31A6Q5VVP1 1343 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 MMP14P50281 582 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 BST1Q10588 318 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 UGP2Q16851 508 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 OR6P1Q8NGX9 317 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 JADE3Q92613 823 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 PTPRN2Q92932 1015 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 AP4E1Q9UPM8 1137 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 FNDC3AQ9Y2H6 1198 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 TRDMT1O14717 391 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 ZNF189O75820 626 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 CHEK2O96017 543 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 SERPINE1P05121 402 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 DSG3P32926 999 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 HSD17B4P51659 736 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 TBL3Q12788 808 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 PTP4A2Q12974 167 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 ANGEL2Q5VTE6 544 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 LCA5Q86VQ0 697 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 BSNDQ8WZ55 320 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 CNBD2Q96M20 576 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 NAT9Q9BTE0 207 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 IRAK4Q9NWZ3 460 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 HACL1Q9UJ83 578 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 AURKCQ9UQB9 309 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 C2CD2Q9Y426 696 aa8.7□□□□□ -1.02
LIMCH1-216ENST00000512820 CSDE1O75534 798 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 CCNE2O96020 404 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 MMP8P22894 467 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 PRAMEP78395 509 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 YWHAHQ04917 246 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ITGA9Q13797 1035 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 AMHR2Q16671 573 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 UNC45BQ8IWX7 931 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 BBS5Q8N3I7 341 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 PBXIP1Q96AQ6 731 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TSPYL2Q9H2G4 693 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 EML4Q9HC35 981 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 ERAP1Q9NZ08 941 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TSPAN16Q9UKR8 245 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 WDR27A2RRH5 827 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 PDE5AO76074 875 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 HMGCRP04035 888 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 TSHRP16473 764 aa8.69□□□□□ -1.02
LIMCH1-216ENST00000512820 SERPINB8P50452 374 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms