RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 TMEM161BQ8NDZ6 487 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 CADM4Q8NFZ8 388 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 TSC1Q92574 1164 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 WBP2Q969T9 261 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 FAM212AQ96EL1 285 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 LGMNQ99538 433 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 CCSER1Q9C0I3 900 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 ABCB6Q9NP58 842 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 GTF3C4Q9UKN8 822 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 STARD13Q9Y3M8 1113 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 PCDHGA1Q9Y5H4 931 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 CREBBPQ92793 2442 aa9.76□□□□□ -0.85
NUP54-211ENST00000512151 E2F8A0AVK6 867 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 HOXC11O43248 304 aaPredicted RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 XPOTO43592 962 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 RFPL3O75679 317 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 MAPTP10636 758 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 GP1BBP13224 206 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 ACTN2P35609 894 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 MATR3P43243 847 aaKnown RBP eCLIP9.75□□□□□ -0.851e-9■■■■□ 19.8
NUP54-211ENST00000512151 ACADVLP49748 655 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 TAF6P49848 677 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 CCT8P50990 548 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 TMPRSS3P57727 454 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 NFKB2Q00653 900 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 TSPY1Q01534 308 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 GAD2Q05329 585 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 NFE2Q16621 373 aaPredicted RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 ME3Q16798 604 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 FUT11Q495W5 492 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 KIAA1614Q5VZ46 1190 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 ZPBP2Q6X784 338 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 TMEM25Q86YD3 366 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 GATAD2AQ86YP4 633 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 FSIP1Q8NA03 581 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 HS3ST6Q96QI5 342 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 NTPCRQ9BSD7 190 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.75□□□□□ -0.85
NUP54-211ENST00000512151 MKRN2Q9H000 416 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 RPF1Q9H9Y2 349 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 ITM2CQ9NQX7 267 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 DEC1Q9P2X7 70 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 KIAA1024Q9UPX6 916 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 ANKRD6Q9Y2G4 727 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 USP9YO00507 2555 aaPredicted RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 ZNF840PA6NDX5 716 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 E9PMD0 336 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 ZBTB24O43167 697 aaPredicted RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 KRT38O76015 456 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 OAS1P00973 400 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 PAX3P23760 479 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 MCM7P33993 719 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 KRT2P35908 639 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 GRIK1P39086 918 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 CCT6AP40227 531 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 TPMTP51580 245 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 NFATC3Q12968 1075 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 STRN3Q13033 797 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 TMEM132DQ14C87 1099 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 INTS6LQ5JSJ4 861 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 PRAMEF14Q5SWL7 426 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 C1orf186Q6ZWK4 172 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 METTL3Q86U44 580 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 PDCL2Q8N4E4 241 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 NECAB1Q8N987 351 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 EXD3Q8N9H8 876 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 SNRNP27Q8WVK2 155 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 IGSF8Q969P0 613 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 ZNF274Q96GC6 653 aaPredicted RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 HIC2Q96JB3 615 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 CNDP2Q96KP4 475 aaKnown RBP9.75□□□□□ -0.85
NUP54-211ENST00000512151 DRC1Q96MC2 740 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 TM9SF3Q9HD45 589 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 KCNK4Q9NYG8 393 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 TRPM5Q9NZQ8 1165 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 L1RE1Q9UN81 338 aa9.75□□□□□ -0.85
NUP54-211ENST00000512151 DOPEY1Q5JWR5 2465 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 ARID1BQ8NFD5 2236 aaPredicted RBP9.74□□□□□ -0.85
NUP54-211ENST00000512151 ABCA12Q86UK0 2595 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 KPNA7A9QM74 516 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 PAPSS1O43252 624 aaPredicted RBP9.74□□□□□ -0.85
NUP54-211ENST00000512151 ATP2C2O75185 946 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 CTDNEP1O95476 244 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 PFKLP17858 780 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 CTSKP43235 329 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 PDE6CP51160 858 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 AFF3P51826 1226 aaKnown RBP9.74□□□□□ -0.85
NUP54-211ENST00000512151 ANKRD1Q15327 319 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 CFAP221Q4G0U5 840 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 GRAMD4Q6IC98 578 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 SDE2Q6IQ49 451 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 RINT1Q6NUQ1 792 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 BBS7Q8IWZ6 715 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 ZNF248Q8NDW4 579 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 ERMNQ8TAM6 284 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 SNX19Q92543 992 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 SNX21Q969T3 373 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 P2RY11Q96G91 374 aa9.74□□□□□ -0.85
NUP54-211ENST00000512151 TSPAN18Q96SJ8 248 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms