RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PNMA6EA0A0J9YXQ4 647 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 WDR27A2RRH5 827 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 VWC2LB2RUY7 222 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 EXOC5O00471 708 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 FCHO1O14526 889 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 PCDH17O14917 1159 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 NPHP1O15259 732 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 DNPH1O43598 174 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 NXPH3O95157 252 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 VNN1O95497 513 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 ANXA6P08133 673 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 ADRB1P08588 477 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 IL6RP08887 468 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 DHRS4L1P0CG22 281 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 HSD3B1P14060 373 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 VEGFAP15692 232 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 ZFXP17010 805 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 MAKP20794 623 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 AVPR1BP47901 424 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 CCT5P48643 541 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 CLCN2P51788 898 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 PDE1AP54750 535 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 CLCA4Q14CN2 919 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 POSTNQ15063 836 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 NBPF8Q3BBV2 869 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 KAZNQ674X7 775 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 KLHL17Q6TDP4 642 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 Q6ZNX1 250 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 NRSN1Q8IZ57 195 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 GALNT15Q8N3T1 639 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 SUN3Q8TAQ9 357 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 STT3BQ8TCJ2 826 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 XAGE5Q8WWM1 108 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 TFAP2BQ92481 460 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 NUDT22Q9BRQ3 303 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 TP63Q9H3D4 680 aaPredicted RBP4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 MMRN2Q9H8L6 949 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 CYP4F11Q9HBI6 524 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 SH2B3Q9UQQ2 575 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 NCANO14594 1321 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 MAST3O60307 1309 aa4.72□□□□□ -1.65
HMGB1P28-201ENST00000507778 CCDC189A1A4V9 331 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 J3KTA2 159 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 WDR47O94967 919 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 FGAP02671 866 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 HTR7P34969 479 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 ARL4CP56559 192 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 PPFIA1Q13136 1202 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 TXNRD1Q16881 649 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 TIGD6Q17RP2 521 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 PLAC9Q5JTB6 97 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 ATPAF1Q5TC12 328 aaPredicted RBP4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 KIAA0895LQ68EN5 471 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 TANGO2Q6ICL3 276 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 SULT6B1Q6IMI4 303 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 JMJD6Q6NYC1 403 aaPredicted RBP4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 RFX8Q6ZV50 586 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 SLC44A3Q8N4M1 653 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 METTL25Q8N6Q8 603 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 SUPT20HQ8NEM7 779 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 OTUD7AQ8TE49 926 aaPredicted RBP4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 WDR60Q8WVS4 1066 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 RUBCNQ92622 972 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 RSC1A1Q92681 617 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 CAVIN3Q969G5 261 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 RFKQ969G6 155 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 PBKQ96KB5 322 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 COQ10AQ96MF6 247 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 WDR24Q96S15 920 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 CCNL1Q9UK58 526 aaPredicted RBP4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 GPR52Q9Y2T5 361 aa4.71□□□□□ -1.66
HMGB1P28-201ENST00000507778 NPIPB8E9PQR5 432 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 IPO5O00410 1097 aaKnown RBP4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 KIAA0355O15063 1070 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 NARSO43776 548 aaKnown RBP4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 ESRRBO95718 433 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 PRKCBP05771 671 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 DLDP09622 509 aaKnown RBP4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 TMEM225BP0DP42 221 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 NR2F6P10588 404 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 GYS1P13807 737 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 TGM1P22735 817 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 GKP32189 559 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 EIF4A1P60842 406 aaKnown RBP4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 MRPS35P82673 323 aaKnown RBP4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 MPP3Q13368 585 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 CSHL1Q14406 222 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 ACOX1Q15067 660 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 ST3GAL2Q16842 350 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 LIN54Q6MZP7 749 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 RINT1Q6NUQ1 792 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 ZNF551Q7Z340 670 aaPredicted RBP4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 VRK3Q8IV63 474 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 LRRC71Q8N4P6 559 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 OR1N1Q8NGS0 311 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 LINC00476Q8WZB0 136 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 RTKNQ9BST9 563 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 FAM167BQ9BTA0 163 aa4.7□□□□□ -1.66
HMGB1P28-201ENST00000507778 ITM2CQ9NQX7 267 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms