RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	TMPRSS11D	O60235	418 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	TLR2	O60603	784 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	SRGAP2	O75044	1071 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	TKT	P29401	623 aa	Known RBP	4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	SLC7A1	P30825	629 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	CCKAR	P32238	428 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	NPY5R	Q15761	445 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	LEXM	Q3ZCV2	418 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	RUSC1-AS1	Q66K80	236 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	SWSAP1	Q6NVH7	229 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	RANBP10	Q6VN20	620 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	DCDC5	Q6ZRR9	648 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	KCTD20	Q7Z5Y7	419 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	CHPF	Q8IZ52	775 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	MAFA	Q8NHW3	353 aa	Predicted RBP	4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	TRIM43	Q96BQ3	446 aa	Predicted RBP	4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	BRIP1	Q9BX63	1249 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	B3GNT5	Q9BYG0	378 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	TMEM60	Q9H2L4	133 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	STK32B	Q9NY57	414 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	MGAT4C	Q9UBM8	478 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	USP19	O94966	1318 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	PYCARD-AS1	I3L0S3	204 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	RRP9	O43818	475 aa	Known RBP	4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	RASAL1	O95294	804 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	PDGFRB	P09619	1106 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	CFHR3	Q02985	330 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	ZNF91	Q05481	1191 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	ANO7	Q6IWH7	933 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	UBE2Q1	Q7Z7E8	422 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	KIAA0319L	Q8IZA0	1049 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	IGFBPL1	Q8WX77	278 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	NMD3	Q96D46	503 aa	Known RBP	4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	KAZALD1	Q96I82	304 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	ZBTB45	Q96K62	511 aa	Predicted RBP	4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	C22orf23	Q9BZE7	217 aa		4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	DHX36	Q9H2U1	1008 aa	Known RBP	4.22	□□□□□ -1.73
CBX3-208	ENST00000497498	CAPN8	A6NHC0	703 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	ISM1	B1AKI9	464 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498		H7C4K7	107 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	FRS3	O43559	492 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	RGS10	O43665	173 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	MARCH6	O60337	910 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	OAZ2	O95190	189 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	CBSL	P0DN79	551 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	CTSA	P10619	480 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	KLRC1	P26715	233 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	CBS	P35520	551 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	PTDSS1	P48651	473 aa	Known RBP	4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	MTHFS	P49914	203 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	GATM	P50440	423 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	ID2	Q02363	134 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	KCNB1	Q14721	858 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	ZNF750	Q32MQ0	723 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	CACHD1	Q5VU97	1274 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	VSTM1	Q6UX27	236 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	RUNDC1	Q96C34	613 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	EDC3	Q96F86	508 aa	Known RBP	4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	FOXP1	Q9H334	677 aa	Predicted RBP	4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	TMEM184C	Q9NVA4	438 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	DDX56	Q9NY93	547 aa	Known RBP	4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	CPNE7	Q9UBL6	633 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498	MAFF	Q9ULX9	164 aa		4.21	□□□□□ -1.74
CBX3-208	ENST00000497498		A8MVJ9	347 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	AGPS	O00116	658 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	EXOC5	O00471	708 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	CTNND1	O60716	968 aa	Known RBP	4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	MYB	P10242	640 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	HGF	P14210	728 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	MCM5	P33992	734 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	PGD	P52209	483 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	EPHB1	P54762	984 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	SUMO3	P55854	103 aa	Predicted RBP	4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	RPS13	P62277	151 aa	Known RBP	4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	ARHGEF7	Q14155	803 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	APOA5	Q6Q788	366 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	C12orf76	Q8N812	135 aa	Predicted RBP	4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	MARK4	Q96L34	752 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	HS6ST2	Q96MM7	605 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	POT1	Q9NUX5	634 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	HEY2	Q9UBP5	337 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	L1RE1	Q9UN81	338 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	LRP12	Q9Y561	859 aa		4.2	□□□□□ -1.74
CBX3-208	ENST00000497498	TTC3	P53804	2025 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	IGKV2D-30	A0A075B6S6	120 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	CD8B2	A6NJW9	211 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	FAM227A	F5H4B4	570 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	CLIC1	O00299	241 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	PARP1	P09874	1014 aa	Known RBP	4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	SCP2	P22307	547 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	HSF1	Q00613	529 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	CNN3	Q15417	329 aa	Known RBP	4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	MIDN	Q504T8	468 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	C9orf47	Q6ZRZ4	202 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	METTL25	Q8N6Q8	603 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	ARFGAP1	Q8N6T3	406 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	PNPLA1	Q8N8W4	532 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	HIC2	Q96JB3	615 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	ZFYVE19	Q96K21	471 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms