RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 SP8Q8IXZ3 490 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 CATSPER1Q8NEC5 780 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 SLC26A7Q8TE54 656 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 FNIP1Q8TF40 1166 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 DDI1Q8WTU0 396 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 CHURC1Q8WUH1 139 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 NMD3Q96D46 503 aaKnown RBP10.06□□□□□ -0.8
SYNE1-230ENST00000495090 RILPQ96NA2 401 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 NRDE2Q9H7Z3 1164 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 THEGQ9P2T0 379 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 CDH22Q9UJ99 828 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 TTLL3Q9Y4R7 772 aa10.06□□□□□ -0.8
SYNE1-230ENST00000495090 H3BNX3 289 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 CST8O60676 142 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 KRT38O76015 456 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 TNFAIP8O95379 198 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 CD48P09326 243 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 CDH5P33151 784 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 JAK3P52333 1124 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 GHRHRQ02643 423 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 STX3Q13277 289 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 UBAP2LQ14157 1087 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 TRIP10Q15642 601 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 FBXL19Q6PCT2 694 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 TIFABQ6ZNK6 161 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 AMIGO3Q86WK7 504 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 UBR7Q8N806 425 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 DIS3LQ8TF46 1054 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 ELMO3Q96BJ8 720 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 LRRC39Q96DD0 335 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 CMTM5Q96DZ9 223 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 FAM213AQ9BRX8 229 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 MECRQ9BV79 373 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 XAB2Q9HCS7 855 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 DNAJC28Q9NX36 388 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 POMPQ9Y244 141 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 DTNAQ9Y4J8 743 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 UBIAD1Q9Y5Z9 338 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 A0A0J9YVX5 310 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 HNRNPDLO14979 420 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 MCF2LO15068 1137 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 OR6B1O95007 311 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 GDF11O95390 407 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 VNN1O95497 513 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 GH2P01242 217 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 RAG1P15918 1043 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 ALOX15P16050 662 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 SFNP31947 248 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 HSPA13P48723 471 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 SERPINB9P50453 376 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 YWHAGP61981 247 aaKnown RBP eCLIP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 FKBP1AP62942 108 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 BASP1P80723 227 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 SLC25A3Q00325 362 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 CNTN2Q02246 1040 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 SPP2Q13103 211 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 HADHQ16836 314 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 TRAPPC3LQ5T215 181 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 KLHDC10Q6PID8 442 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 RBM44Q6ZP01 1051 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 FAM160B2Q86V87 743 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 UNC45BQ8IWX7 931 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 TMEM35BQ8NCS4 154 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 RDM1Q8NG50 284 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 PIWIL2Q8TC59 973 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 ZNF606Q8WXB4 792 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 APOBEC3GQ9HC16 384 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 ARHGAP28Q9P2N2 729 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 PSMD13Q9UNM6 376 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 APOBEC2Q9Y235 224 aaKnown RBP10.05□□□□□ -0.8
SYNE1-230ENST00000495090 TELO2Q9Y4R8 837 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 STYXL1Q9Y6J8 313 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 SMCHD1A6NHR9 2005 aa10.05□□□□□ -0.8
SYNE1-230ENST00000495090 KLRG2A4D1S0 409 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-230ENST00000495090 SPDYE2BA6NHP3 402 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 MEI4A8MW99 385 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 SPDYE6P0CI01 402 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 EIF4BP23588 611 aaKnown RBP10.04□□□□□ -0.8
SYNE1-230ENST00000495090 KDELR1P24390 212 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 CNTFP26441 200 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 MAGEA6P43360 314 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 SCNN1BP51168 640 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 MTTPP55157 894 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 EIF3EP60228 445 aaKnown RBP10.04□□□□□ -0.8
SYNE1-230ENST00000495090 TCP10Q12799 353 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 DCTN2Q13561 401 aaKnown RBP10.04□□□□□ -0.8
SYNE1-230ENST00000495090 NCOA4Q13772 614 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 APOFQ13790 326 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 TLR1Q15399 786 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 LRRC36Q1X8D7 754 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 TKFCQ3LXA3 575 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 SPDYE2Q495Y8 402 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 XKR9Q5GH70 373 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 NUP93Q8N1F7 819 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 PQLC1Q8N2U9 271 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 FBXW8Q8N3Y1 598 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 GAB3Q8WWW8 586 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 AGBL1Q96MI9 1066 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 KCNK16Q96T55 309 aa10.04□□□□□ -0.8
SYNE1-230ENST00000495090 EBF4Q9BQW3 602 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms