RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 GPR15P49685 360 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 SLC5A3P53794 718 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 ERVK-21P61565 698 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 SLC25A11Q02978 314 aaKnown RBP13.26□□□□□ -0.29
VPS52-220ENST00000493674 PTPROQ16827 1216 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 WHAMMP3Q1A5X7 153 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 CCDC14Q49A88 953 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 ZNF572Q7Z3I7 529 aaPredicted RBP13.26□□□□□ -0.29
VPS52-220ENST00000493674 POLNQ7Z5Q5 900 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 SPRED2Q7Z698 418 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 CREG2Q8IUH2 290 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 SPPL3Q8TCT6 385 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 COG1Q8WTW3 980 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 NDRG1Q92597 394 aaKnown RBP13.26□□□□□ -0.29
VPS52-220ENST00000493674 C17orf80Q9BSJ5 609 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 ADAM33Q9BZ11 813 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 COMMD8Q9NX08 183 aa13.26□□□□□ -0.29
VPS52-220ENST00000493674 TTC7AQ9ULT0 858 aaPredicted RBP13.26□□□□□ -0.29
VPS52-220ENST00000493674 YJEFN3A6XGL0 299 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 E7ENQ6 273 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 C2CD2LO14523 706 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 TEX28O15482 410 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 SRGAP2O75044 1071 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 GRAP2O75791 330 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 ENDOD1O94919 500 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 SEC24AO95486 1093 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 LTFP02788 710 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 USP17L7P0C7H9 530 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 TCF4P15884 667 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 PDGFRAP16234 1089 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 DNAJB1P25685 340 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 NOS2P35228 1153 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 MATKP42679 507 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 ARPP19P56211 112 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 RPL10AP62906 217 aaKnown RBP13.25□□□□□ -0.29
VPS52-220ENST00000493674 YWHAZP63104 245 aaKnown RBP13.25□□□□□ -0.29
VPS52-220ENST00000493674 DUSP4Q13115 394 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 RAB30Q15771 203 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 DAB2IPQ5VWQ8 1189 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 CC2D1AQ6P1N0 951 aaPredicted RBP13.25□□□□□ -0.29
VPS52-220ENST00000493674 HFE2Q6ZVN8 426 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 CYP4V2Q6ZWL3 525 aaPredicted RBP13.25□□□□□ -0.29
VPS52-220ENST00000493674 SCN4BQ8IWT1 228 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 TCEAL8Q8IYN2 117 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 KATNAL2Q8IYT4 538 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 NUP93Q8N1F7 819 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 RASGEF1CQ8N431 466 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 SCAMP5Q8TAC9 235 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 AUTS2Q8WXX7 1259 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 PBKQ96KB5 322 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 NPY6RQ99463 290 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 TTLL2Q9BWV7 592 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 POPDC2Q9HBU9 364 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.25□□□□□ -0.29
VPS52-220ENST00000493674 SCML2Q9UQR0 700 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 YBX2Q9Y2T7 364 aaKnown RBP13.25□□□□□ -0.29
VPS52-220ENST00000493674 NUP205Q92621 2012 aa13.25□□□□□ -0.29
VPS52-220ENST00000493674 CDH23Q9H251 3354 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 SHROOM3Q8TF72 1996 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 PDE2AO00408 941 aaPredicted RBP13.24□□□□□ -0.29
VPS52-220ENST00000493674 SOX1O00570 391 aaPredicted RBP13.24□□□□□ -0.29
VPS52-220ENST00000493674 KCNK3O14649 394 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 RIOK3O14730 519 aaKnown RBP13.24□□□□□ -0.29
VPS52-220ENST00000493674 ZNF185O15231 689 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 RTN3O95197 1032 aaPredicted RBP13.24□□□□□ -0.29
VPS52-220ENST00000493674 C1RP00736 705 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 CA3P07451 260 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 CNPP09543 421 aaKnown RBP13.24□□□□□ -0.29
VPS52-220ENST00000493674 SDC4P31431 198 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 TUFMP49411 452 aaKnown RBP13.24□□□□□ -0.29
VPS52-220ENST00000493674 ERVFC1P60507 584 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 USP46P62068 366 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 CAMK1Q14012 370 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 DDR2Q16832 855 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 C15orf59Q2T9L4 293 aaPredicted RBP13.24□□□□□ -0.29
VPS52-220ENST00000493674 LILRA6Q6PI73 481 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 STRADAQ7RTN6 431 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 SCD5Q86SK9 330 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 RHOT1Q8IXI2 618 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 DEFB106AQ8N104 65 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 UBL4BQ8N7F7 174 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 PGAP3Q96FM1 320 aaPredicted RBP13.24□□□□□ -0.29
VPS52-220ENST00000493674 CFAP57Q96MR6 1250 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 NCAPGQ9BPX3 1015 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 FBXO44Q9H4M3 255 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 RNF14Q9UBS8 474 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 SLC27A5Q9Y2P5 690 aa13.24□□□□□ -0.29
VPS52-220ENST00000493674 SOAT2O75908 522 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 IGLV3-25P01717 112 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 ZDHHC11BP0C7U3 371 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 TFE3P19532 575 aaPredicted RBP13.23□□□□□ -0.29
VPS52-220ENST00000493674 DNAJB2P25686 324 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 IL1R2P27930 398 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 MIPP30301 263 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 CXCR5P32302 372 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 HDAC4P56524 1084 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 RNASE9P60153 205 aaKnown RBP13.23□□□□□ -0.29
VPS52-220ENST00000493674 ITIH3Q06033 890 aa13.23□□□□□ -0.29
VPS52-220ENST00000493674 EIF4EBP2Q13542 120 aaPredicted RBP13.23□□□□□ -0.29
VPS52-220ENST00000493674 SMC1AQ14683 1233 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms