RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PGLYRP2Q96PD5 576 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PCYT2Q99447 389 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DDX18Q9NVP1 670 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MYH7BA7E2Y1 1941 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HNRNPCL1O60812 293 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RPL21P46778 160 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ADARP55265 1226 aaKnown RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TAF5Q15542 800 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ASTE1Q2TB18 679 aaPredicted RBP11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NOTUMQ6P988 496 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C16orf87Q6PH81 154 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C6orf89Q6UWU4 347 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DCLK2Q8N568 766 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ICA1LQ8NDH6 482 aa11.17□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CLDN5O00501 218 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ARL4AP40617 200 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MMRN1Q13201 1228 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 WASHC2DQ5SRD0 308 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MFSD14CQ5VZR4 134 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 KRT80Q6KB66 452 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 IZUMO2Q6UXV1 221 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TAS1R3Q7RTX0 852 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TFAP2BQ92481 460 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CCDC124Q96CT7 223 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NEUROG2Q9H2A3 272 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RAB6BQ9NRW1 208 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TUBGCP4Q9UGJ1 667 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 R3HDM2Q9Y2K5 976 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MAFBQ9Y5Q3 323 aaPredicted RBP11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NR2E3Q9Y5X4 410 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ADAMTSL1Q8N6G6 1762 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NHSQ6T4R5 1651 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ABLIM1O14639 778 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 XPOTO43592 962 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C11orf91Q3C1V1 193 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SLC9A9Q8IVB4 645 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BBOF1Q8ND07 529 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 JOSD2Q8TAC2 188 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RXFP2Q8WXD0 754 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CENPTQ96BT3 561 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ZBED3Q96IU2 234 aaPredicted RBP11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CTNNAL1Q9UBT7 734 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 KAT6AQ92794 2004 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CHRNB2P17787 502 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PHBP35232 272 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DSG1Q02413 1049 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 IL31Q6EBC2 164 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CCDC80Q76M96 950 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 WDR49Q8IV35 697 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PPM1NQ8N819 430 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CXorf38Q8TB03 319 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ACTL9Q8TC94 416 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SLC13A1Q9BZW2 595 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CDHR5Q9HBB8 845 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DNPEPQ9ULA0 475 aa11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DIS3Q9Y2L1 958 aaKnown RBP11.16□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DDX60LQ5H9U9 1706 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TIAM2Q8IVF5 1701 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MYH4Q9Y623 1939 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C17orf102A2RUQ5 167 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DCDC2CA8MYV0 355 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GZMAP12544 262 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 OR1G1P47890 313 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CPA2P48052 419 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MAP3K7CLP57077 242 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HTRA3P83110 453 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MFSD10Q14728 455 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NPNTQ6UXI9 565 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NANOGNBQ7Z5D8 188 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 APOL2Q9BQE5 337 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 IFT122Q9HBG6 1241 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DNAAF2Q9NVR5 837 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ASNSD1Q9NWL6 643 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BCAP29Q9UHQ4 241 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RPTORQ8N122 1335 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FAM47DPA6NHR8 397 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PPEF2O14830 753 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CDH16O75309 829 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 LYPLA2O95372 231 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SMIM10L2AP0DMW4 78 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SMIM10L2BP0DMW5 78 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GJA5P36382 358 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MLH1P40692 756 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 OTUD4Q01804 1114 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GCNT1Q02742 428 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 KDSRQ06136 332 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FSCN1Q16658 493 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CCDC142Q17RM4 750 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 KIAA1841Q6NSI8 718 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 LRRC74BQ6ZQY2 392 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PRELID2Q8N945 189 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ATL2Q8NHH9 583 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SLC2A14Q8TDB8 520 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TTC17Q96AE7 1141 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TMEM176AQ96HP8 235 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FAM81BQ96LP2 452 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ROPN1BQ9BZX4 212 aaPredicted RBP11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ROPN1Q9HAT0 212 aaPredicted RBP11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NDUFA13Q9P0J0 144 aa11.15□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SCN7AQ01118 1682 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms