RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 MAPK4P31152 587 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 ELF1P32519 619 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 TECP42680 631 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 RARRES1P49788 294 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 CTXN1P60606 82 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 HTRA4P83105 476 aaPredicted RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 FMO1Q01740 532 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 TARDBPQ13148 414 aaKnown RBP eCLIP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 SMAD1Q15797 465 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 FAM110CQ1W6H9 321 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 CCDC92Q53HC0 331 aaPredicted RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 SLC10A5Q5PT55 438 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 C1QL2Q7Z5L3 287 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 MOGAT3Q86VF5 341 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 NRSN1Q8IZ57 195 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 CHCHD4Q8N4Q1 142 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 IL31RAQ8NI17 732 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 STT3BQ8TCJ2 826 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 HTRA1Q92743 480 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 TMX3Q96JJ7 454 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 ZSCAN31Q96LW9 406 aaPredicted RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 DUSP26Q9BV47 211 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 TLR10Q9BXR5 811 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 AGXT2Q9BYV1 514 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 VSX1Q9NZR4 365 aaPredicted RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 FOXJ2Q9P0K8 574 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 ISY1Q9ULR0 285 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 STXBP5LQ9Y2K9 1186 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 GAPVD1Q14C86 1478 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 SNAPC4Q5SXM2 1469 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 ABCA5Q8WWZ7 1642 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 APOL1O14791 398 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 GRM6O15303 877 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 P4HA2O15460 535 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 MGEA5O60502 916 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 USO1O60763 962 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 IGLV2-14P01704 120 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 KITP10721 976 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 MTHFD1P11586 935 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 WASP42768 502 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 ABCG1P45844 678 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 CLK1P49759 484 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 CCR5P51681 352 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 MRPS35P82673 323 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 SF3B3Q15393 1217 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 TAF12Q16514 161 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 ZACNQ401N2 412 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 PGBD2Q6P3X8 592 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 NEK10Q6ZWH5 1172 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 RSPH3Q86UC2 560 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 ARHGEF25Q86VW2 580 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 COLGALT2Q8IYK4 626 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 LNX2Q8N448 690 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 ACTRT2Q8TDY3 377 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 SSH3Q8TE77 659 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 STYXQ8WUJ0 223 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 TRAPPC12Q8WVT3 735 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 HERVK_113Q902F9 699 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 NUDT16L1Q9BRJ7 211 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 SEZ6LQ9BYH1 1024 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 BTBD1Q9H0C5 482 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 DHX36Q9H2U1 1008 aaKnown RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 WASH6PQ9NQA3 447 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 TDP1Q9NUW8 608 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 KCTD5Q9NXV2 234 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 DACT1Q9NYF0 836 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 IGSF9Q9P2J2 1179 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 LRIT1Q9P2V4 623 aa3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 NFKBIL1Q9UBC1 381 aaPredicted RBP3.62□□□□□ -1.83
DEPDC1-204ENST00000489862 TRGV11A0A075B6L2 103 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 A0A0B4J269 797 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 MYO1FO00160 1098 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 SKAP2O75563 359 aaPredicted RBP3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 GJB3O75712 270 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 HAUS5O94927 633 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 AGFG2O95081 481 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 MATN4O95460 622 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 EEF1GP26641 437 aaKnown RBP3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 ACTN2P35609 894 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 SERPINF1P36955 418 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 ARL4CP56559 192 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 KRT32Q14532 448 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 CCNG2Q16589 344 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 ARL13BQ3SXY8 428 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 UTP14CQ5TAP6 766 aaKnown RBP3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 HAUS3Q68CZ6 603 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 RFX8Q6ZV50 586 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 FAM47EQ6ZV65 393 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 NLGN4YQ8NFZ3 816 aaPredicted RBP3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 IFI44Q8TCB0 444 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 SH3KBP1Q96B97 665 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 MAELQ96JY0 434 aaKnown RBP3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 PDLIM2Q96JY6 352 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 ASB2Q96Q27 587 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 MED15Q96RN5 788 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 DMRTA2Q96SC8 542 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 DESI2Q9BSY9 194 aa3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 ELAC1Q9H777 363 aaKnown RBP3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.61□□□□□ -1.83
DEPDC1-204ENST00000489862 KIF17Q9P2E2 1029 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 241.2 ms