RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 ZNF528Q3MIS6 628 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 SGO2Q562F6 1265 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 TMEM270Q6UE05 265 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 ASCL5Q7RTU5 278 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 SCD5Q86SK9 330 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 PIGZQ86VD9 579 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 KIAA1958Q8N8K9 716 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 GPT2Q8TD30 523 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 IER2Q9BTL4 223 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 CYLDQ9NQC7 956 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 C2orf42Q9NWW7 574 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 TSPAN16Q9UKR8 245 aa22.31■■□□□ 1.16
LIME1-207ENST00000489212 PTPRZ1P23471 2315 aaPredicted RBP22.3■■□□□ 1.16
LIME1-207ENST00000489212 CD19P15391 556 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 SATB1Q01826 763 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 GAB4Q2WGN9 574 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 CCDC186Q7Z3E2 898 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 DDX42Q86XP3 938 aaKnown RBP eCLIP22.3■■□□□ 1.16
LIME1-207ENST00000489212 CREBRFQ8IUR6 639 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 ADGRG2Q8IZP9 1017 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 TFAP2BQ92481 460 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 KREMEN1Q96MU8 473 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 IPO9Q96P70 1041 aaKnown RBP22.3■■□□□ 1.16
LIME1-207ENST00000489212 ZSWIM1Q9BR11 485 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 UBXN6Q9BZV1 441 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 INTS2Q9H0H0 1204 aaKnown RBP22.3■■□□□ 1.16
LIME1-207ENST00000489212 PCDHB4Q9Y5E5 795 aa22.3■■□□□ 1.16
LIME1-207ENST00000489212 PRR23AA6NEV1 266 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 O00370 1275 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 GFRA3O60609 400 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 NFATC1O95644 943 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 EGFP01133 1207 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 CALCAP01258 141 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 CYP17A1P05093 508 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 VDRP11473 427 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 AMPD2Q01433 879 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 GCNT1Q02742 428 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 PDE4CQ08493 712 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 GRSF1Q12849 480 aaKnown RBP eCLIP22.29■■□□□ 1.16
LIME1-207ENST00000489212 RAB41Q5JT25 222 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 SPEM1Q8N4L4 309 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 NELL1Q92832 810 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 NKD2Q969F2 451 aaPredicted RBP22.29■■□□□ 1.16
LIME1-207ENST00000489212 GBP4Q96PP9 640 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 P2RY13Q9BPV8 354 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.29■■□□□ 1.16
LIME1-207ENST00000489212 NUDT5Q9UKK9 219 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 GPR179Q6PRD1 2367 aa22.29■■□□□ 1.16
LIME1-207ENST00000489212 EP300Q09472 2414 aaPredicted RBP22.28■■□□□ 1.16
LIME1-207ENST00000489212 E2F8A0AVK6 867 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 MDM4O15151 490 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 PAEPP09466 180 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 RARGP13631 454 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 BCAT1P54687 386 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 PKN3Q6P5Z2 889 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 SYNPOQ8N3V7 929 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 UBA3Q8TBC4 463 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 EZH1Q92800 747 aaPredicted RBP22.28■■□□□ 1.16
LIME1-207ENST00000489212 CRACR2AQ9BSW2 395 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 KLF16Q9BXK1 252 aaPredicted RBP22.28■■□□□ 1.16
LIME1-207ENST00000489212 NACA2Q9H009 215 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 NAGPAQ9UK23 515 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 KIAA1257Q9ULG3 409 aa22.28■■□□□ 1.16
LIME1-207ENST00000489212 SLC9A3R1O14745 358 aaPredicted RBP22.27■■□□□ 1.16
LIME1-207ENST00000489212 XPO1O14980 1071 aaKnown RBP22.27■■□□□ 1.16
LIME1-207ENST00000489212 GREM1O60565 184 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 IRF1P10914 325 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 HOXC13P31276 330 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 OPRD1P41143 372 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 CXCL12P48061 93 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 CCR3P51677 355 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 ZNF132P52740 706 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 NR1H3Q13133 447 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 DHCR24Q15392 516 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 PKDCCQ504Y2 493 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 RHBDF2Q6PJF5 856 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 RBBP8NLQ8NC74 664 aaPredicted RBP22.27■■□□□ 1.16
LIME1-207ENST00000489212 CD101Q93033 1021 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 SH3BP1Q9Y3L3 701 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 GVINP1Q7Z2Y8 2422 aa22.27■■□□□ 1.16
LIME1-207ENST00000489212 BRD2P25440 801 aaKnown RBP22.26■■□□□ 1.15
LIME1-207ENST00000489212 ATP5C1P36542 298 aaKnown RBP22.26■■□□□ 1.15
LIME1-207ENST00000489212 TKTL1P51854 596 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 SLC8A3P57103 927 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 BST2Q10589 180 aaKnown RBP22.26■■□□□ 1.15
LIME1-207ENST00000489212 KLHDC10Q6PID8 442 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 ZC3H14Q6PJT7 736 aaKnown RBP22.26■■□□□ 1.15
LIME1-207ENST00000489212 LCLAT1Q6UWP7 414 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 BHLHA9Q7RTU4 235 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 BBS7Q8IWZ6 715 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 ZBTB44Q8NCP5 570 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 NDRG1Q92597 394 aaKnown RBP22.26■■□□□ 1.15
LIME1-207ENST00000489212 THAP9Q9H5L6 903 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 ZSCAN32Q9NX65 697 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 TBC1D14Q9P2M4 693 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 HESX1Q9UBX0 185 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 FRYLO94915 3013 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 CFAP54Q96N23 3096 aa22.26■■□□□ 1.15
LIME1-207ENST00000489212 OTOGLQ3ZCN5 2332 aa22.25■■□□□ 1.15
LIME1-207ENST00000489212 SLC9A1P19634 815 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms