RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	EPHA10	Q5JZY3	1008 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	GLCCI1	Q86VQ1	547 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	ADAMTS18	Q8TE60	1221 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	SCARB1	Q8WTV0	552 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	EFHD1	Q9BUP0	239 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	C1QTNF7	Q9BXJ2	289 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	DHX36	Q9H2U1	1008 aa	Known RBP	5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	SNX15	Q9NRS6	342 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	ZNF212	Q9UDV6	495 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	CORO2B	Q9UQ03	480 aa		5.76	□□□□□ -1.49
PTPN4-212	ENST00000488896	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	AQP7P3	A6NL99	342 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896		F8W8V4	182 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	ADAMTS3	O15072	1205 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	TP73	O15350	636 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	CHRM5	P08912	532 aa	Predicted RBP	5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	SFPQ	P23246	707 aa	Known RBP eCLIP	5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	IL1R2	P27930	398 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	SSBP2	P81877	361 aa	Predicted RBP	5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	ZNF268	Q14587	947 aa	Predicted RBP	5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	MORN5	Q5VZ52	161 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	RRAGB	Q5VZM2	374 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	PLAG1	Q6DJT9	500 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	ZNF425	Q6IV72	752 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	TMEM65	Q6PI78	240 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	CLEC9A	Q6UXN8	241 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	C1QL2	Q7Z5L3	287 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	GALNT16	Q8N428	558 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	METTL25	Q8N6Q8	603 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	IPCEF1	Q8WWN9	437 aa	Predicted RBP	5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	RPL36AL	Q969Q0	106 aa	Known RBP	5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	CTHRC1	Q96CG8	243 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	WDYHV1	Q96HA8	205 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	SNX22	Q96L94	193 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	HS6ST2	Q96MM7	605 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	FYTTD1	Q96QD9	318 aa	Known RBP	5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	HIST1H2AA	Q96QV6	131 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	AS3MT	Q9HBK9	375 aa		5.75	□□□□□ -1.49
PTPN4-212	ENST00000488896	TMEM232	C9JQI7	657 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	MT-CO3	P00414	261 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	MT-ND5	P03915	603 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	TIAL1	Q01085	375 aa	Known RBP eCLIP	5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	DENND2C	Q68D51	928 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	MAFA	Q8NHW3	353 aa	Predicted RBP	5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	DENND1A	Q8TEH3	1009 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	DKK4	Q9UBT3	224 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	NKX1-2	Q9UD57	310 aa	Predicted RBP	5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	ASAP1	Q9ULH1	1129 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	RIMKLB	Q9ULI2	386 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	HPSE	Q9Y251	543 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	BTBD3	Q9Y2F9	522 aa		5.74	□□□□□ -1.49
PTPN4-212	ENST00000488896	SNX2	O60749	519 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	PQBP1	O60828	265 aa	Known RBP	5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	INMT	O95050	263 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	APEH	P13798	732 aa	Known RBP	5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	PHKG2	P15735	406 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	MMP13	P45452	471 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	RNF44	Q7L0R7	432 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	PRSS22	Q9GZN4	317 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	NUP62CL	Q9H1M0	184 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	DNAJB11	Q9UBS4	358 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	FAM50B	Q9Y247	325 aa		5.73	□□□□□ -1.49
PTPN4-212	ENST00000488896	RHPN2P1	A8MT19	583 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896		M0R3H8	397 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	TMPRSS11D	O60235	418 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	CD19	P15391	556 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	MCM5	P33992	734 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	DEUP1	Q05D60	604 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	DAZAP2	Q15038	168 aa	Predicted RBP	5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	LRCH2	Q5VUJ6	765 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	DCDC5	Q6ZRR9	648 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	USP49	Q70CQ1	688 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	MSLNL	Q96KJ4	702 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	SPRTN	Q9H040	489 aa	Predicted RBP	5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	FAM83D	Q9H4H8	585 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	USP29	Q9HBJ7	922 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	SCAF8	Q9UPN6	1271 aa	Known RBP	5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	SLC27A6	Q9Y2P4	619 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	ZNF521	Q96K83	1311 aa		5.72	□□□□□ -1.49
PTPN4-212	ENST00000488896	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	BTBD19	C9JJ37	291 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	DSCR3	O14972	297 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	CA12	O43570	354 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	RNF8	O76064	485 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	KCNB1	Q14721	858 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	RABEP1	Q15276	862 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896		Q4G0T1	1027 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	CC2D1B	Q5T0F9	858 aa	Known RBP	5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	MANEAL	Q5VSG8	457 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	CYB5RL	Q6IPT4	315 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	C11orf87	Q6NUJ2	197 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	LIX1L	Q8IVB5	337 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	FSTL5	Q8N475	847 aa	Predicted RBP	5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	NGDN	Q8NEJ9	315 aa	Known RBP	5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	PRSS3P2	Q8NHM4	247 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	OSR1	Q8TAX0	266 aa	Predicted RBP	5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	ZNF668	Q96K58	619 aa	Predicted RBP	5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	STRBP	Q96SI9	672 aa	Known RBP	5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	FAM118B	Q9BPY3	351 aa		5.71	□□□□□ -1.5
PTPN4-212	ENST00000488896	BRIP1	Q9BX63	1249 aa		5.71	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms