RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CA9Q16790 459 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 FAM47CQ5HY64 1035 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 SH2D5Q6ZV89 423 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 PPM1NQ8N819 430 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 DPP3Q9NY33 737 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 PTPRFP10586 1907 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 CFAP69A5D8W1 941 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 C2orf71A6NGG8 1288 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 CXorf49A8MYA2 514 aaPredicted RBP18.69■□□□□ 0.58
VIM-206ENST00000487938 ADM5C9JUS6 153 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 MCF2P10911 925 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 TSHRP16473 764 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 NEK3P51956 506 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 TNFAIP2Q03169 654 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 CTC1Q2NKJ3 1217 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 CCDC33Q8N5R6 958 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 TRIM55Q9BYV6 548 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.68■□□□□ 0.58
VIM-206ENST00000487938 CHADO15335 359 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 WFS1O76024 890 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 CDC25CP30307 473 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 ETV4P43268 484 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 RASSF2P50749 326 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 YWHAZP63104 245 aaKnown RBP18.68■□□□□ 0.58
VIM-206ENST00000487938 GOLGA7BQ2TAP0 167 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 PMF1Q6P1K2 205 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 MOB2Q70IA6 237 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 SCUBE3Q8IX30 993 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 PQLC3Q8N755 202 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 PRR11Q96HE9 360 aaPredicted RBP18.68■□□□□ 0.58
VIM-206ENST00000487938 APOPT1Q96IL0 206 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 CXCL16Q9H2A7 254 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 ASB7Q9H672 318 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 PCNTO95613 3336 aa18.68■□□□□ 0.58
VIM-206ENST00000487938 TRIM49D1C9J1S8 452 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 PTPN4P29074 926 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 SLC26A2P50443 739 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 ARFIP2P53365 341 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 BCAR1P56945 870 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 SLC18A2Q05940 514 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 PPP1R26Q5T8A7 1209 aaPredicted RBP18.67■□□□□ 0.58
VIM-206ENST00000487938 LCLAT1Q6UWP7 414 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 CDHR3Q6ZTQ4 885 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 PCDH19Q8TAB3 1148 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 TTC8Q8TAM2 541 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 NT5C1AQ9BXI3 368 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 MAGEB5Q9BZ81 275 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 VRTNQ9H8Y1 702 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 KCNK13Q9HB14 408 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 GBA2Q9HCG7 927 aaPredicted RBP18.67■□□□□ 0.58
VIM-206ENST00000487938 ARL8BQ9NVJ2 186 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 ERAP1Q9NZ08 941 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 PAK5Q9P286 719 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 A0A0G2JMZ2 1700 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 LRRC37A2A6NM11 1700 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 A0A0G2JLL6 359 aaPredicted RBP18.67■□□□□ 0.58
VIM-206ENST00000487938 APOL1O14791 398 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 PEX11AO75192 247 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 SLC25A27O95847 323 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 APRTP07741 180 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 DHRS4L1P0CG22 281 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 PPP6R3Q5H9R7 873 aaPredicted RBP18.67■□□□□ 0.58
VIM-206ENST00000487938 ANKRD20A2Q5SQ80 823 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 ANKRD20A1Q5TYW2 823 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 ANKRD20A3Q5VUR7 823 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 PRRT2Q7Z6L0 340 aaPredicted RBP18.67■□□□□ 0.58
VIM-206ENST00000487938 MAP7D3Q8IWC1 876 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 CCDC110Q8TBZ0 833 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 ZNF398Q8TD17 642 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 FAM172AQ8WUF8 416 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 FAXDC2Q96IV6 333 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 TRIM56Q9BRZ2 755 aaKnown RBP18.67■□□□□ 0.58
VIM-206ENST00000487938 TMEM120AQ9BXJ8 343 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 FBXO6Q9NRD1 293 aaPredicted RBP18.67■□□□□ 0.58
VIM-206ENST00000487938 FAM49BQ9NUQ9 324 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 TTLL3Q9Y4R7 772 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 PAPPA2Q9BXP8 1791 aa18.67■□□□□ 0.58
VIM-206ENST00000487938 DNAJC25-GNG10A0A024R161 153 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 H0Y3Z8 333 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 UGT1A9O60656 530 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 ZBED1O96006 694 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 SERPINB3P29508 390 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 RBP5P82980 135 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 PRKD1Q15139 912 aaPredicted RBP18.66■□□□□ 0.58
VIM-206ENST00000487938 ACOT1Q86TX2 421 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 CAND1Q86VP6 1230 aaKnown RBP18.66■□□□□ 0.58
VIM-206ENST00000487938 LPIN3Q9BQK8 851 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 MIS12Q9H081 205 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 UGT1A7Q9HAW7 530 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 UGT1A10Q9HAW8 530 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 UGT1A8Q9HAW9 530 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 PCDH18Q9HCL0 1135 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 SLC5A4Q9NY91 659 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 ZC3H7BQ9UGR2 993 aaKnown RBP18.66■□□□□ 0.58
VIM-206ENST00000487938 ENTPD5O75356 428 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 C1QAP02745 245 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 TFE3P19532 575 aaPredicted RBP18.66■□□□□ 0.58
VIM-206ENST00000487938 ZBTB16Q05516 673 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 INCA1Q0VD86 236 aa18.66■□□□□ 0.58
VIM-206ENST00000487938 TTLL4Q14679 1199 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms