RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 FAF2Q96CS3 445 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 PI4K2AQ9BTU6 479 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 CCDC106Q9BWC9 280 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 GCOM2Q9BZD3 368 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-209ENST00000487188 BRD8Q9H0E9 1235 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 FETUBQ9UGM5 382 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 ITGA11Q9UKX5 1188 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 MYRFQ9Y2G1 1151 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 ATAD5Q96QE3 1844 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 ATRNL1Q5VV63 1379 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 EDIL3O43854 480 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 DNAJA2O60884 412 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 SPAG6O75602 509 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 ENO3P13929 434 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-209ENST00000487188 NFKBIAP25963 317 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 ALDH1B1P30837 517 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 CRKLP46109 303 aaKnown RBP6.47□□□□□ -1.37
VPS13D-209ENST00000487188 RPL10AP62906 217 aaKnown RBP6.47□□□□□ -1.37
VPS13D-209ENST00000487188 UBXN2AP68543 259 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 GSTM4Q03013 218 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 RELAQ04206 551 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 GAD2Q05329 585 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 KLF1Q13351 362 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-209ENST00000487188 ART3Q13508 389 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 TRIM16LQ309B1 348 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 ANKRD22Q5VYY1 191 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 PAOXQ6QHF9 649 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 C16orf89Q6UX73 402 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 FASTKD5Q7L8L6 764 aaKnown RBP6.47□□□□□ -1.37
VPS13D-209ENST00000487188 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-209ENST00000487188 DEPDC1BQ8WUY9 529 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 NDEL1Q9GZM8 345 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 ZNF696Q9H7X3 374 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 EHMT1Q9H9B1 1298 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 THAP1Q9NVV9 213 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 FADS3Q9Y5Q0 445 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 LAMB1P07942 1786 aa6.47□□□□□ -1.37
VPS13D-209ENST00000487188 H7C0C1 242 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 CYB561D2O14569 222 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 ZBTB39O15060 712 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 DENRO43583 198 aaKnown RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 DCXO43602 365 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 ITM2AO43736 263 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 SORBS2O94875 1100 aaKnown RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 CFBP00751 764 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 CDH2P19022 906 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 PAX3P23760 479 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 ATP5OP48047 213 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 CLK2P49760 499 aaKnown RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 CDK9P50750 372 aaKnown RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 PRELPP51888 382 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 OTUD4Q01804 1114 aaKnown RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 SNAPC2Q13487 334 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 ITGA7Q13683 1181 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 NRF1Q16656 503 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 BRDTQ58F21 947 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 MROH9Q5TGP6 573 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 NXNQ6DKJ4 435 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 THOC7Q6I9Y2 204 aaKnown RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 ZFP1Q6P2D0 407 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 DARS2Q6PI48 645 aaKnown RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 PADI6Q6TGC4 694 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 BNC2Q6ZN30 1099 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-209ENST00000487188 C1orf186Q6ZWK4 172 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 RNF169Q8NCN4 708 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 FEZF2Q8TBJ5 459 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 TAS1R2Q8TE23 839 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 SLITRK1Q96PX8 696 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 TMEM79Q9BSE2 394 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 DMAC2Q9NW81 257 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 TXNDC16Q9P2K2 825 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 TBC1D30Q9Y2I9 924 aa6.46□□□□□ -1.37
VPS13D-209ENST00000487188 LRP5O75197 1615 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 TCRBV9S1A1TA0A576 114 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 WDR64B1ANS9 1081 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 KLF11O14901 512 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 LYPLA1O75608 230 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 HSPA4LO95757 839 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 CCDC130P13994 396 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 AOC1P19801 751 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 PTP4A2Q12974 167 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ADGRE1Q14246 886 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 INAQ16352 499 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SNRNP35Q16560 246 aaKnown RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 FASTKD1Q53R41 847 aaKnown RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 TFDP3Q5H9I0 405 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 OGFRL1Q5TC84 451 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SLFN13Q68D06 897 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 PLEKHA7Q6IQ23 1121 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 CBWD2Q8IUF1 395 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ADCY4Q8NFM4 1077 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 LMO3Q8TAP4 145 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 DEPTORQ8TB45 409 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SHKBP1Q8TBC3 707 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 PIWIL2Q8TC59 973 aaKnown RBP6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ACTL9Q8TC94 416 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 ACTRT2Q8TDY3 377 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 SLC44A1Q8WWI5 657 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 POMGNT1Q8WZA1 660 aa6.46□□□□□ -1.38
VPS13D-209ENST00000487188 GPATCH1Q9BRR8 931 aaKnown RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms