RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TPH1P17752 444 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 ATF3P18847 181 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 ARHGAP25P42331 645 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 KRTAP10-11P60412 298 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 SUMO2P61956 95 aaKnown RBP4.74□□□□□ -1.65
VPS41-213ENST00000485955 HTRA4P83105 476 aaPredicted RBP4.74□□□□□ -1.65
VPS41-213ENST00000485955 DAZAP2Q15038 168 aaPredicted RBP4.74□□□□□ -1.65
VPS41-213ENST00000485955 ETFDHQ16134 617 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 FAM187BQ17R55 369 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 PPP4R4Q6NUP7 873 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 YAF2Q8IY57 180 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 GALNT16Q8N428 558 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 ADAMTS18Q8TE60 1221 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 MSLNLQ96KJ4 702 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 PRDM11Q9NQV5 511 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 KLHL13Q9P2N7 655 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 MGAT4CQ9UBM8 478 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 RGS17Q9UGC6 210 aaPredicted RBP4.74□□□□□ -1.65
VPS41-213ENST00000485955 ASAP1Q9ULH1 1129 aa4.74□□□□□ -1.65
VPS41-213ENST00000485955 CYP2D7A0A087X1C5 515 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 KCNU1A8MYU2 1149 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 MT-CO3P00414 261 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 CHRM5P08912 532 aaPredicted RBP4.73□□□□□ -1.65
VPS41-213ENST00000485955 ATF7P17544 494 aaPredicted RBP4.73□□□□□ -1.65
VPS41-213ENST00000485955 MCM5P33992 734 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 CARSP49589 748 aaKnown RBP4.73□□□□□ -1.65
VPS41-213ENST00000485955 DEUP1Q05D60 604 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 MORN5Q5VZ52 161 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 USP49Q70CQ1 688 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 LINC01465Q8N7H1 131 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 SNX22Q96L94 193 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 CCDC17Q96LX7 622 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 PRSS22Q9GZN4 317 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 NRIP3Q9NQ35 241 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 TBC1D23Q9NUY8 699 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 RIMKLBQ9ULI2 386 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 CAPN11Q9UMQ6 739 aa4.73□□□□□ -1.65
VPS41-213ENST00000485955 GCATO75600 419 aa4.72□□□□□ -1.65
VPS41-213ENST00000485955 A1BGP04217 495 aa4.72□□□□□ -1.65
VPS41-213ENST00000485955 IL1R2P27930 398 aa4.72□□□□□ -1.65
VPS41-213ENST00000485955 MTHFSP49914 203 aa4.72□□□□□ -1.65
VPS41-213ENST00000485955 FHL3Q13643 280 aa4.72□□□□□ -1.65
VPS41-213ENST00000485955 MANEALQ5VSG8 457 aa4.72□□□□□ -1.65
VPS41-213ENST00000485955 PHKBQ93100 1093 aa4.72□□□□□ -1.65
VPS41-213ENST00000485955 RPL36ALQ969Q0 106 aaKnown RBP4.72□□□□□ -1.65
VPS41-213ENST00000485955 ZC3H10Q96K80 434 aaKnown RBP4.72□□□□□ -1.65
VPS41-213ENST00000485955 STRBPQ96SI9 672 aaKnown RBP4.72□□□□□ -1.65
VPS41-213ENST00000485955 EFHD1Q9BUP0 239 aa4.72□□□□□ -1.65
VPS41-213ENST00000485955 SPRTNQ9H040 489 aaPredicted RBP4.72□□□□□ -1.65
VPS41-213ENST00000485955 DDX21Q9NR30 783 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS41-213ENST00000485955 AQP7P3A6NL99 342 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 BTBD19C9JJ37 291 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 UBE2Q2LH0YL09 131 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 M0R3H8 397 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 FCHO1O14526 889 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 TOP3BO95985 862 aaKnown RBP4.71□□□□□ -1.66
VPS41-213ENST00000485955 PIK3CBP42338 1070 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 CERKLQ49MI3 558 aaPredicted RBP4.71□□□□□ -1.66
VPS41-213ENST00000485955 RRAGBQ5VZM2 374 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 MIS18BP1Q6P0N0 1132 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 CLEC9AQ6UXN8 241 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 DGKHQ86XP1 1220 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 CNGA4Q8IV77 575 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 MAFAQ8NHW3 353 aaPredicted RBP4.71□□□□□ -1.66
VPS41-213ENST00000485955 ZNF398Q8TD17 642 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 PNISRQ8TF01 805 aaKnown RBP4.71□□□□□ -1.66
VPS41-213ENST00000485955 KAZALD1Q96I82 304 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 FYTTD1Q96QD9 318 aaKnown RBP4.71□□□□□ -1.66
VPS41-213ENST00000485955 HIST1H2AAQ96QV6 131 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 BRIP1Q9BX63 1249 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 NUP62CLQ9H1M0 184 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 FAM83DQ9H4H8 585 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 WDR26Q9H7D7 661 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 TRIM36Q9NQ86 728 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 NKX1-2Q9UD57 310 aaPredicted RBP4.71□□□□□ -1.66
VPS41-213ENST00000485955 ZNF212Q9UDV6 495 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 VPS51Q9UID3 782 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 SCAF8Q9UPN6 1271 aaKnown RBP4.71□□□□□ -1.66
VPS41-213ENST00000485955 SLC27A6Q9Y2P4 619 aa4.71□□□□□ -1.66
VPS41-213ENST00000485955 A0A087WZ62 844 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 BCAR3O75815 825 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 USP1O94782 785 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 ATP5F1P24539 256 aaPredicted RBP4.7□□□□□ -1.66
VPS41-213ENST00000485955 SEC23BQ15437 767 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 ZNF813Q6ZN06 617 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 RNF44Q7L0R7 432 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 KRT78Q8N1N4 520 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 PRR11Q96HE9 360 aaPredicted RBP4.7□□□□□ -1.66
VPS41-213ENST00000485955 SELENOOQ9BVL4 669 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 BTBD1Q9H0C5 482 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 SNX15Q9NRS6 342 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 DNAJB11Q9UBS4 358 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 CORO2BQ9UQ03 480 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 HPSEQ9Y251 543 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 SNX13Q9Y5W8 968 aa4.7□□□□□ -1.66
VPS41-213ENST00000485955 TMEM232C9JQI7 657 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 H3BNC9 293 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 CA12O43570 354 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 TMPRSS11DO60235 418 aa4.69□□□□□ -1.66
VPS41-213ENST00000485955 MOSPD3O75425 235 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms