RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PORP16435 677 aaPredicted RBP8.03□□□□□ -1.12
USP4-211ENST00000485450 EDRF1Q3B7T1 1238 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 MAP7D1Q3KQU3 841 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 GUF1Q8N442 669 aaKnown RBP8.03□□□□□ -1.12
USP4-211ENST00000485450 RIN3Q8TB24 985 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 GDAP1Q8TB36 358 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 SCFD1Q8WVM8 642 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 TMEM143Q96AN5 459 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 SELENOSQ9BQE4 189 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 MIS12Q9H081 205 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 GBA3Q9H227 469 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 LUC7LQ9NQ29 371 aaKnown RBP8.03□□□□□ -1.12
USP4-211ENST00000485450 FAM105AQ9NUU6 356 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 FAM32AQ9Y421 112 aaKnown RBP8.03□□□□□ -1.12
USP4-211ENST00000485450 SLC30A1Q9Y6M5 507 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 CETN3O15182 167 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 HNRNPCP07910 306 aaKnown RBP eCLIP8.03□□□□□ -1.12
USP4-211ENST00000485450 NUDT17P0C025 328 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 UBL4AP11441 157 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 VHLP40337 213 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 MAGEA1P43355 309 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 ARPC4P59998 168 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 DEFB103AP81534 67 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 TAP1Q03518 808 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 MRPL58Q14197 206 aaKnown RBP8.03□□□□□ -1.12
USP4-211ENST00000485450 RCN2Q14257 317 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 CFAP157Q5JU67 520 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 MEI1Q5TIA1 1274 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.03□□□□□ -1.12
USP4-211ENST00000485450 GPBP1Q86WP2 473 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 DDX42Q86XP3 938 aaKnown RBP eCLIP8.03□□□□□ -1.12
USP4-211ENST00000485450 KLHL7Q8IXQ5 586 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 COLGALT2Q8IYK4 626 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 FAM13CQ8NE31 585 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 SEC14L1Q92503 715 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 FGFBP2Q9BYJ0 223 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 PBX4Q9BYU1 374 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 DPH5Q9H2P9 285 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 TMEM206Q9H813 350 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 ETNK1Q9HBU6 452 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 GPRC5CQ9NQ84 441 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 TXLNGQ9NUQ3 528 aa8.03□□□□□ -1.12
USP4-211ENST00000485450 ATP5HO75947 161 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 FBXO21O94952 628 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 OXSR1O95747 527 aaPredicted RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 KLK7P49862 253 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 PMS2P54278 862 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 PPIDQ08752 370 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 DMP1Q13316 513 aaPredicted RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 CRY1Q16526 586 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 GSTA3Q16772 222 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 TREML1Q86YW5 311 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 IRGQQ8WZA9 623 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 DDX27Q96GQ7 796 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 HIC2Q96JB3 615 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 OSMRQ99650 979 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 HERC2P3Q9BVR0 1158 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 MRPL4Q9BYD3 311 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 TTYH1Q9H313 450 aaPredicted RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 LARSQ9P2J5 1176 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 INSL6Q9Y581 213 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 LINC01553A4QN01 128 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 TMEM110-MUSTN1A8MSY1 372 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 H3BNC9 293 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 M0QZ92 97 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 PDXKO00764 312 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 ADAM23O75077 832 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 AFPP02771 609 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 EIF4A3P38919 411 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 PRCPP42785 496 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 RXRGP48443 463 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 CASP5P51878 434 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 DHX9Q08211 1270 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 KPNB1Q14974 876 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 RNF43Q68DV7 783 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 ERGIC2Q96RQ1 377 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 CGREF1Q99674 301 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 SH3GL1Q99961 368 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 MKNK1Q9BUB5 465 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 DDX23Q9BUQ8 820 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 MRPL9Q9BYD2 267 aaKnown RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 CDT1Q9H211 546 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 SYNCQ9H7C4 482 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 DCLRE1BQ9H816 532 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 TUBA8Q9NY65 449 aaPredicted RBP8.02□□□□□ -1.13
USP4-211ENST00000485450 STOML1Q9UBI4 398 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 IPPQ9Y573 584 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 NOTCH4Q99466 2003 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 REV3LO60673 3130 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 PTGESO14684 152 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 ARHGEF15O94989 841 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 AGTP01019 485 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 PRKCBP05771 671 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 STAG3L1P0CL83 205 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 CNGA2Q16280 664 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 KIZQ2M2Z5 673 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 DPY19L2P1Q6NXN4 242 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 NEK10Q6ZWH5 1172 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 ADSSL1Q8N142 457 aa8.02□□□□□ -1.13
USP4-211ENST00000485450 INPP5DQ92835 1189 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms