RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 GTPBP2Q9BX10 602 aaKnown RBP14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 SLC39A2Q9NP94 309 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 TMEM74BQ9NUR3 256 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 EHD2Q9NZN4 543 aa14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 MBD1Q9UIS9 605 aaPredicted RBP14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 FASNP49327 2511 aaKnown RBP14.71□□□□□ -0.05
SQSTM1-208ENST00000485412 TCRBV21S2A2A0A5A6 115 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 A8MXQ7 604 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 TRIM24O15164 1050 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 MBL2P11226 248 aaPredicted RBP14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 ITPKAP23677 461 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 KIR2DL1P43626 348 aaPredicted RBP14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 TNNC1P63316 161 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 CUL4BQ13620 913 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 SPDYCQ5MJ68 293 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 LY6G5CQ5SRR4 150 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 TDRD10Q5VZ19 366 aaKnown RBP14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 CNNM4Q6P4Q7 775 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 STXBP4Q6ZWJ1 553 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 PIP4P1Q86T03 277 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 FAM35AQ86V20 835 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 XXYLT1Q8NBI6 393 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 ELOVL4Q9GZR5 314 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 ZSCAN16Q9H4T2 348 aaPredicted RBP14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 CCSER2Q9H7U1 834 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 KIAA1586Q9HCI6 787 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 ARHGEF4Q9NR80 690 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 HMGXB4Q9UGU5 601 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 CHORDC1Q9UHD1 332 aaPredicted RBP14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 PILRBQ9UKJ0 227 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 HCN2Q9UL51 889 aa14.7□□□□□ -0.06
SQSTM1-208ENST00000485412 UPK3BL1B0FP48 263 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 UPK3BL2E5RIL1 263 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 H0Y626 953 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 POLR2DO15514 142 aaKnown RBP14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 AP5Z1O43299 807 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 OPHN1O60890 802 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 PPP6R2O75170 966 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 BEST1O76090 585 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 TRIM16O95361 564 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 VNN1O95497 513 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 ADH1CP00326 375 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 ADH5P11766 374 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 YWHAQP27348 245 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 HOXD12P35452 270 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 EIF2DP41214 584 aaKnown RBP14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 GFPT1Q06210 699 aaPredicted RBP14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 SEMA3BQ13214 749 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 DUOXA1Q1HG43 343 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 MAP7D1Q3KQU3 841 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 UNC13DQ70J99 1090 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 BBS7Q8IWZ6 715 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 NUP93Q8N1F7 819 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 KIAA1958Q8N8K9 716 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 NAT16Q8N8M0 369 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 ZMIZ2Q8NF64 920 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 CEP76Q8TAP6 659 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 FBXO32Q969P5 355 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 ERLEC1Q96DZ1 483 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 CEP295NLQ96MC4 621 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 FSCN3Q9NQT6 498 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 GMIPQ9P107 970 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 SLC6A14Q9UN76 642 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 PCDH15Q96QU1 1955 aa14.69□□□□□ -0.06
SQSTM1-208ENST00000485412 UBE4BO95155 1302 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 ADAMTS20P59510 1910 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 LRRIQ3A6PVS8 624 aaPredicted RBP14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 K7ELQ4 463 aaPredicted RBP14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 CUTAO60888 179 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 STAU1O95793 577 aaKnown RBP14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 IRF1P10914 325 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 CCDC130P13994 396 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 GRIA2P42262 883 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 TNFRSF4P43489 277 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 AFMP43652 599 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 PPP3CCP48454 512 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 SLC5A3P53794 718 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 DLG4P78352 724 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 RPL6Q02878 288 aaKnown RBP14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 BMT2Q1RMZ1 405 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 SLC36A4Q6YBV0 504 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 RABEPKQ7Z6M1 372 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 DDX42Q86XP3 938 aaKnown RBP eCLIP14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 MIB1Q86YT6 1006 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 ETFBKMTQ8IXQ9 262 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 FUKQ8N0W3 1084 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 CHCHD4Q8N4Q1 142 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 DEFB119Q8N690 84 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 IQUBQ8NA54 791 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 SLITRK1Q96PX8 696 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 CUEDC2Q9H467 287 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 KRT82Q9NSB4 513 aa14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 DSPP15924 2871 aaKnown RBP14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 ANKRD11Q6UB99 2663 aaPredicted RBP14.68□□□□□ -0.06
SQSTM1-208ENST00000485412 KLRC4O43908 158 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 YEATS4O95619 227 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 SERPINF2P08697 491 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 TRPC3Q13507 836 aa14.67□□□□□ -0.06
SQSTM1-208ENST00000485412 ZNF423Q2M1K9 1284 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms