RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 MFSD14AQ96MC6 490 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 ARHGEF38Q9NXL2 777 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 SLC9A2Q9UBY0 812 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 A0A0B4J269 797 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 DKC1O60832 514 aaKnown RBP eCLIP19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 AOC1P19801 751 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 MSX2P35548 267 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 C1QBPQ07021 282 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 DCTN2Q13561 401 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 DPYSL3Q14195 570 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 VWA5B1Q5TIE3 1220 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 LRRC8BQ6P9F7 803 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 ITM2AO43736 263 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 HSPA1LP34931 641 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 RPL10AP62906 217 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 JAG1P78504 1218 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 CUL2Q13617 745 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 TEX44Q53QW1 395 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 TRIM72Q6ZMU5 477 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 GMCL1Q96IK5 515 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 PI4KBQ9UBF8 816 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 CIDEBQ9UHD4 219 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 AK5Q9Y6K8 562 aa19.49■□□□□ 0.71
CCDC88B-207ENST00000479965 TTLL13PA6NNM8 815 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 H3BSA7 217 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 STRNO43815 780 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 PSMA2P25787 234 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 PPIDQ08752 370 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 LGSNQ5TDP6 509 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 TDRD10Q5VZ19 366 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 DARS2Q6PI48 645 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 MAP4K3Q8IVH8 894 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 JADE3Q92613 823 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 MXRA8Q9BRK3 442 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 Q9H521 79 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 LIN28AQ9H9Z2 209 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 SIRPGQ9P1W8 387 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 WNK3Q9BYP7 1800 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 CCNT2O60583 730 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 SIN3BO75182 1162 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 VIL1P09327 827 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 KCNA4P22459 653 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 WNT7BP56706 349 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 KRT81Q14533 505 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 CYTH1Q15438 398 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 SH3D19Q5HYK7 790 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 GAB3Q8WWW8 586 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 ZNF606Q8WXB4 792 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 HSPH1Q92598 858 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 VCPIP1Q96JH7 1222 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 APOBEC3GQ9HC16 384 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 ZC3H7BQ9UGR2 993 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 FAF1Q9UNN5 650 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 PPME1Q9Y570 386 aa19.48■□□□□ 0.71
CCDC88B-207ENST00000479965 MAP3K6O95382 1288 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 IL1BP01584 269 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 SERPINB8P50452 374 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 RNF168Q8IYW5 571 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 SPATA18Q8TC71 538 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 RAB6BQ9NRW1 208 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 DDX56Q9NY93 547 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 AP4B1Q9Y6B7 739 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 MCF2LO15068 1137 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 MMP8P22894 467 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 XIAPP98170 497 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 SPP2Q13103 211 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 C6orf52Q5T4I8 152 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 NPNTQ6UXI9 565 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 LRRN4Q8WUT4 740 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 BSNDQ8WZ55 320 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 LZICQ8WZA0 190 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 LRGUKQ96M69 825 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 RIT2Q99578 217 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 EPB41L1Q9H4G0 881 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 ARHGAP10A1A4S6 786 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 DNAJA2O60884 412 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 BPGMP07738 259 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 CBX3Q13185 183 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 CC2D2BQ6DHV5 1058 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 RAB3IL1Q8TBN0 382 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 PIWIL2Q8TC59 973 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 ZC3H12CQ9C0D7 883 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 XPNPEP1Q9NQW7 623 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 THAP1Q9NVV9 213 aa19.47■□□□□ 0.71
CCDC88B-207ENST00000479965 DCXO43602 365 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 RFPL1O75677 317 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 KLHL2O95198 593 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 ACO1P21399 889 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 WASHC5Q12768 1159 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 FASTKD1Q53R41 847 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 FRMD7Q6ZUT3 714 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 ZNF554Q86TJ5 538 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 KCTD6Q8NC69 237 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 IL31RAQ8NI17 732 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 BTBD9Q96Q07 612 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 SUDS3Q9H7L9 328 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 DMTF1Q9Y222 760 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 TEX264Q9Y6I9 313 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 SBF2Q86WG5 1849 aa19.46■□□□□ 0.71
CCDC88B-207ENST00000479965 TRMUO75648 421 aaKnown RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms