RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MROH7Q68CQ1 1323 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 PABPN1LA6NDY0 278 aaKnown RBP13.99□□□□□ -0.17
USP42-206ENST00000479544 LIASO43766 372 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 DGAT1O75907 488 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 FGRP09769 529 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 MARSP56192 900 aaKnown RBP13.99□□□□□ -0.17
USP42-206ENST00000479544 SNX32Q86XE0 403 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 DDIASQ8IXT1 998 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 OR6P1Q8NGX9 317 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 TMEM79Q9BSE2 394 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 FAM192AQ9GZU8 254 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 RNPEPQ9H4A4 650 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 PIF1Q9H611 641 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 RSAD1Q9HA92 442 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 MYH13Q9UKX3 1938 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 FESP07332 822 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 NCKAP1LP55160 1127 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 RTP1P59025 263 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 PLEKHA7Q6IQ23 1121 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 GLIS1Q8NBF1 620 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 SHC3Q92529 594 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 CNDP1Q96KN2 507 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 EPAS1Q99814 870 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 WDR18Q9BV38 432 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 FAM49AQ9H0Q0 323 aaPredicted RBP13.99□□□□□ -0.17
USP42-206ENST00000479544 FAM96AQ9H5X1 160 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 PTPRHQ9HD43 1115 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 MYH15Q9Y2K3 1946 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 CNTNAP4Q9C0A0 1308 aa13.99□□□□□ -0.17
USP42-206ENST00000479544 USP12O75317 370 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 CETPP11597 493 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 SLC1A6P48664 564 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 MAMLD1Q13495 774 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 TUBGCP5Q96RT8 1024 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 JPH1Q9HDC5 661 aaPredicted RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 ZNF302Q9NR11 478 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 CISHQ9NSE2 258 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 SYCE1LA8MT33 242 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 RTN3O95197 1032 aaPredicted RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 NR3C2P08235 984 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 SERPINB8P50452 374 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 YWHAHQ04917 246 aaPredicted RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 Q4G0T1 1027 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 TSHZ1Q6ZSZ6 1077 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 HPS6Q86YV9 775 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 ZMYM2Q9UBW7 1377 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 ASMTLO95671 621 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 CYP1A2P05177 515 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 SFNP31947 248 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 RHBDL3P58872 404 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 TSPY1Q01534 308 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 ZBTB17Q13105 803 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 MMRN1Q13201 1228 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 AMHR2Q16671 573 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 LRRC8BQ6P9F7 803 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 BNC2Q6ZN30 1099 aaPredicted RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 CDKL3Q8IVW4 592 aaPredicted RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 CRAMP1Q96RY5 1269 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 CCDC68Q9H2F9 335 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 UBP1Q9NZI7 540 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 CDY2AQ9Y6F7 541 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 CDY1Q9Y6F8 540 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 ABCC6O95255 1503 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 ABCA3Q99758 1704 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 A0A0B4J269 797 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 FAM58BPP0C7Q3 252 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 CHRNB2P17787 502 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 STIP1P31948 543 aaKnown RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 JAM2P57087 298 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 PDAP1Q13442 181 aaKnown RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 TKFCQ3LXA3 575 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 KLC3Q6P597 504 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 DHDDSQ86SQ9 333 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 PCDH20Q8N6Y1 951 aaKnown RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 PSPC1Q8WXF1 523 aaKnown RBP13.98□□□□□ -0.17
USP42-206ENST00000479544 PHACTR1Q9C0D0 580 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 EBF3Q9H4W6 596 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 MID2Q9UJV3 735 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 SNX9Q9Y5X1 595 aa13.98□□□□□ -0.17
USP42-206ENST00000479544 CHRNA5P30532 468 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 CCDC92Q53HC0 331 aaPredicted RBP13.97□□□□□ -0.17
USP42-206ENST00000479544 FAM160B1Q5W0V3 765 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 MTHFD1LQ6UB35 978 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 SATL1Q86VE3 508 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 CATSPER1Q8NEC5 780 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 ZMAT2Q96NC0 199 aaKnown RBP13.97□□□□□ -0.17
USP42-206ENST00000479544 NIF3L1Q9GZT8 377 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 USP18Q9UMW8 372 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 EXTL3O43909 919 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 ZNF189O75820 626 aaPredicted RBP13.97□□□□□ -0.17
USP42-206ENST00000479544 DAB2P98082 770 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 DALRD3Q5D0E6 543 aaKnown RBP13.97□□□□□ -0.17
USP42-206ENST00000479544 ANKRD22Q5VYY1 191 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 CIAPIN1Q6FI81 312 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 HHIPL2Q6UWX4 724 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 ZBTB49Q6ZSB9 765 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 ZNF677Q86XU0 584 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 UNC45BQ8IWX7 931 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 TNS4Q8IZW8 715 aa13.97□□□□□ -0.17
USP42-206ENST00000479544 SIX6OS1Q8N1H7 587 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms