RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 DDHD2O94830 711 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 LCA5LO95447 670 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 CALCAP01258 141 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 AMHP03971 560 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 CTSBP07858 339 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 FAM228BP0C875 321 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 CYP11B1P15538 503 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 CHRNB2P17787 502 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 WARSP23381 471 aaKnown RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 ITPKAP23677 461 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 PAX3P23760 479 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 NDST1P52848 882 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 RAD23BP54727 409 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 EPHB4P54760 987 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 CDH8P55286 799 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 BPIFB4P59827 614 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 FMO1Q01740 532 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 CDR2Q01850 454 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 BMS1Q14692 1282 aaKnown RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 SLC18A3Q16572 532 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 SOWAHAQ2M3V2 549 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 PSRC1Q6PGN9 363 aaPredicted RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 Q6ZS46 218 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 C16orf59Q7L2K0 433 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 OSTM1Q86WC4 334 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 PALB2Q86YC2 1186 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 ADGRF2Q8IZF7 708 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 CCAR2Q8N163 923 aaKnown RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 LRRC43Q8N309 656 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 C17orf53Q8N3J3 647 aaPredicted RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 TTC39CQ8N584 583 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 TOP6BLQ8N6T0 577 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 SLC4A11Q8NBS3 891 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 LNX1Q8TBB1 728 aaPredicted RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 DDX1Q92499 740 aaKnown RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 RABGGTAQ92696 567 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 SENP8Q96LD8 212 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 CCDC42Q96M95 316 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 TWNKQ96RR1 684 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 MMS19Q96T76 1030 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 AGPAT1Q99943 283 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 ZSWIM1Q9BR11 485 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 MRPL45Q9BRJ2 306 aaKnown RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 DEF6Q9H4E7 631 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 NRDE2Q9H7Z3 1164 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 ACP6Q9NPH0 428 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 KCND1Q9NSA2 647 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 ZMYND8Q9ULU4 1186 aaPredicted RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 BARX2Q9UMQ3 279 aaPredicted RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 L1RE1Q9UN81 338 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 PPP2R2CQ9Y2T4 447 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 NME7Q9Y5B8 376 aa7.07□□□□□ -1.28
USP48-208ENST00000479177 EPN1Q9Y6I3 576 aaPredicted RBP7.07□□□□□ -1.28
USP48-208ENST00000479177 ATP8B3O60423 1300 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 CHD9Q3L8U1 2897 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 LOC100289279A0A1B0GTE1 492 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 ANKRD33BA6NCL7 494 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 USP27XA6NNY8 438 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 M0QZQ0 153 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 CYB561D2O14569 222 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 HUS1O60921 280 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 DGKIO75912 1065 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 B3GAT3O94766 335 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 CYP11A1P05108 521 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 ITGB1P05556 798 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 PAEPP09466 180 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 CCDC175P0C221 793 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 FAM163BP0C2L3 166 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 SYN1P17600 705 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 GNA15P30679 374 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 SLC11A1P49279 550 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 ARL4DP49703 201 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 CYP27A1Q02318 531 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 RNASELQ05823 741 aaKnown RBP7.06□□□□□ -1.28
USP48-208ENST00000479177 GFPT1Q06210 699 aaPredicted RBP7.06□□□□□ -1.28
USP48-208ENST00000479177 PAN2Q504Q3 1202 aaKnown RBP7.06□□□□□ -1.28
USP48-208ENST00000479177 TIGD5Q53EQ6 642 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 TMEM240Q5SV17 173 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 TAF3Q5VWG9 929 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 WSCD1Q658N2 575 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 DCLRE1AQ6PJP8 1040 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 ZNF365Q70YC5 407 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 DPH6Q7L8W6 267 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 VPS36Q86VN1 386 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 UNC93AQ86WB7 457 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 ZNF677Q86XU0 584 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 TMEM86AQ8N2M4 240 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 PDCL2Q8N4E4 241 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 APPL2Q8NEU8 664 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 SLC30A5Q8TAD4 765 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 SPATA18Q8TC71 538 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 HASPINQ8TF76 798 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 TFAP2BQ92481 460 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 TOP1MTQ969P6 601 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 ZNF689Q96CS4 500 aaPredicted RBP7.06□□□□□ -1.28
USP48-208ENST00000479177 PPP1R13BQ96KQ4 1090 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 FAM193BQ96PV7 902 aaPredicted RBP7.06□□□□□ -1.28
USP48-208ENST00000479177 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.06□□□□□ -1.28
USP48-208ENST00000479177 TRIM56Q9BRZ2 755 aaKnown RBP7.06□□□□□ -1.28
USP48-208ENST00000479177 TMEM175Q9BSA9 504 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms